Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G21
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012) 29 2.4
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) 29 2.4
SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_31038| Best HMM Match : NifT (HMM E-Value=0.76) 28 5.4
SB_11321| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18) 28 7.2
SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42) 27 9.5
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1) 27 9.5
SB_33077| Best HMM Match : R3H (HMM E-Value=0.38) 27 9.5
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 27 9.5
>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 31.1 bits (67), Expect = 0.77
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = -3
Query: 247 ISEIQQQRPATRSYYRTL-----TNHECTRYMSKLKSQNRQFYEQ-----PAC*VS*KKV 98
I ++ +RPATR Y L ++ E + + K + + +Q +E+ S K+
Sbjct: 170 IDNLKTKRPATRDYVGVLQQWRASDDEILQELHKQRKEMKQSFEEAKQSFEEAKQSLKEA 229
Query: 97 LQFIVGKFTKRRN*AAKHRQLHTKWRICVTK 5
Q G TKRR K R+ TK R TK
Sbjct: 230 KQSFEGSETKRRRSETKRRRSETKRRRSETK 260
>SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 598
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 549 FNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGT-ARRTTLSPCH*HLNTHTRA 373
F +C A + + CS+++ +P HR DL G T S + ++NT TRA
Sbjct: 405 FVVCDARKRPKSCSEILSSSAPEHRVTLGDLLDKWERNGKHLLARTYSKSYTNMNTTTRA 464
Query: 372 RASTSRDVVCT 340
+V T
Sbjct: 465 AEEPQDEVNAT 475
>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 882
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 549 FNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGT-ARRTTLSPCH*HLNTHTRA 373
F +C A + + CS+++ +P HR DL G T S + ++NT TRA
Sbjct: 689 FVVCDARKRPKSCSEILSSSAPEHRVTLGDLLDKWERNGKHLLARTYSKSYTNMNTTTRA 748
Query: 372 RASTSRDVVCT 340
+V T
Sbjct: 749 AEEPQDEVNAT 759
>SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -1
Query: 435 GTARRTTLSPCH*HLNTHTRARASTSRDVVCTLAR 331
G+ARRT H H THT AR T+ VV T+AR
Sbjct: 44 GSARRTRT---HTHARTHTHARTHTNTKVV-TVAR 74
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = -1
Query: 498 RPRSPLHRHNGID-LTAASAPPGTARRTTLSPCH*HLNTH-------TRARASTSRDVVC 343
+ ++P R N ++ TAA+ P +RR+++SP L + +R TSR
Sbjct: 151 KKKTPPRRTNLLEAFTAAAGTPAGSRRSSISPASPALRSSLGSLAPTSRTSTPTSRSTPR 210
Query: 342 TLARTQTRTP 313
+ +R++ RTP
Sbjct: 211 SRSRSRARTP 220
>SB_31038| Best HMM Match : NifT (HMM E-Value=0.76)
Length = 619
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 268 FTVPQP*ISEIQQQRPATRSYYRTLTN--HECTRYMSKLKSQNRQFYE 131
F PQ IS+ +Q P + T+ H C+R+ L+S+N YE
Sbjct: 40 FYYPQNFISDSRQHIPNQPMHRHTVLRKIHHCSRHYRDLESRNIDLYE 87
>SB_11321| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
Length = 704
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -1
Query: 609 IHARSLWQHLAFVHLKR 559
+HAR +W++LA +H+K+
Sbjct: 473 LHARRVWENLAAIHMKK 489
>SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42)
Length = 218
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 485 GDRGLTTSLQQRW*RAAEHILKRLCRFKWTNAR 583
G G+ +SLQ W R E + K WTNA+
Sbjct: 71 GPGGVVSSLQDDWYRFGETMFKIFPPKSWTNAK 103
>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
Length = 519
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 393 LNTHTRARASTSRDVVCTLARTQTRTPQKLALHFVVSIRRHVS 265
L+ H RA + T R++ L R + T ++ L S+RR +S
Sbjct: 306 LSEHLRATSMTGREISGPLHRKLSTTDRQCLLGIPPSVRRRIS 348
>SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)
Length = 332
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 563 SGKAALIYVPQRVTSAAVAT*SGRDHRSIGTTALT*RQRRRHLGPHDAQ 417
SGKAA + V + + RD RSI T R+R+RH D +
Sbjct: 275 SGKAAATTTKSNTSYGVVPSENKRDLRSIEETLNDIRKRKRHRPNEDGE 323
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 477 RHNGIDLTAASAPPGTARRTTLSPCH*HLNTHTRARASTSRDVVCT 340
R NG D + R + PCH +L H+ S+SR +V T
Sbjct: 535 RRNGRDCQPHAQDKSPPPRVLMLPCHQYLTIHSNIN-SSSRQLVST 579
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,724
Number of Sequences: 59808
Number of extensions: 413536
Number of successful extensions: 1013
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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