Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).  pr...    32   1.9  
AK000755-1|BAA91361.1|  147|Homo sapiens protein ( Homo sapiens ...    31   2.5  
AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    31   3.4  
AK074528-1|BAC11041.1|  145|Homo sapiens protein ( Homo sapiens ...    30   5.9  
AF217403-1|AAF24515.1|  837|Homo sapiens low density lipoprotein...    30   5.9  
AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens ...    30   7.8  

>AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).
           protein.
          Length = 377

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -3

Query: 493 AITAPSAQRH*LDGSVGATWDRTTHNTLTVSLALKHTHTRAREHLPRRCLHTRTHS 326
           A T P  Q H        T   T  +T + S  L HTH+ A  H P    HT  H+
Sbjct: 115 ACTHPHVQTHTASAYTFTTHSHTPGHTHSCS-HLIHTHSHAHSHPPNAPTHTHAHT 169



 Score = 30.3 bits (65), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 388 HTHTRAREHLPRRCLHTRTHSNTHAPKVST 299
           H+HT    H     +HT +H+++H P   T
Sbjct: 134 HSHTPGHTHSCSHLIHTHSHAHSHPPNAPT 163



 Score = 29.9 bits (64), Expect = 7.8
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 424 THNTLTVSLALKHTHTRAREHLPRRCLHTRTHSNTHAPKVSTALCS*YT*T 272
           T  T + S    HTH+    H      HT +H+ TH P V T   S YT T
Sbjct: 83  TQCTSSHSHTCSHTHSLTCPHTLAPTRHTHSHACTH-PHVQTHTASAYTFT 132


>AK000755-1|BAA91361.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20748 fis, clone HEP05772. ).
          Length = 147

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 388 HTHTRAREHLPRRCLHTRTHSNTH 317
           HTHT    H  R C H R H++TH
Sbjct: 86  HTHTHTHTHT-RTCTHARMHTHTH 108


>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 408 PCH*HLNTHTRARAS----TSRDVVCTLARTQTRTPQKLALHFVVSIRRH 271
           P H H +THT A       T    VCT   T T T   L+L++++S+  H
Sbjct: 28  PTHTHTHTHTHAHCPVPPYTHAHAVCTSLHTHTHT-HTLSLYWLISLYIH 76


>AK074528-1|BAC11041.1|  145|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90047 fis, clone HEMBA1002316. ).
          Length = 145

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 421 HNTLTV--SLALKHTHTRAREHLPRRCLHTRTHSNTHAPKVSTA 296
           H T T+  S  L + H R   H PR  LHT T  + H P+V TA
Sbjct: 75  HPTYTIPPSTPLPNLHRRPHSH-PR--LHTHTRPHHHLPRVRTA 115


>AF217403-1|AAF24515.1|  837|Homo sapiens low density lipoprotein
           receptor protein.
          Length = 837

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 417 LCVVRSQVAPTLPSSQCRCADGAVIAA*LRRYSSAGDA 530
           LC+  SQ+ P  P   C C DG ++A  +R   +  +A
Sbjct: 657 LCLPASQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 694


>AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42636 fis, clone BRACE3023912. ).
          Length = 175

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 445 GATWDRTTHNTLTVSLALKHTH--TRAREHLPRRCLHTRTHSNTH 317
           G   D   H+  T +    H H  T A+ H     LHTR H++TH
Sbjct: 63  GTHADARIHSASTCTRVHIHAHAGTHAQMHTQCTYLHTRVHTHTH 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,780,164
Number of Sequences: 237096
Number of extensions: 1710223
Number of successful extensions: 4089
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4070
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)