Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094813-1|AAM11166.1| 1413|Drosophila melanogaster LD30602p pro...    29   5.2  
AE014134-2739|AAF53547.2| 1413|Drosophila melanogaster CG31738-P...    29   5.2  
AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-P...    29   5.2  
AE014296-1869|AAN11890.1|  253|Drosophila melanogaster CG32080-P...    28   9.1  
AE014134-1082|AAF52374.2| 1196|Drosophila melanogaster CG9506-PA...    28   9.1  

>AY094813-1|AAM11166.1| 1413|Drosophila melanogaster LD30602p
           protein.
          Length = 1413

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508 RRSQAAITAPSAQRH*LDGSVGATWDRTTHNTLTVSLALKHTHTRAREHLPRRCLHTRTH 329
           ++ Q  +  P+ Q     GSVGA        T T + A  H+H+ A  H      H + H
Sbjct: 74  QQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSH-----THPQPH 128

Query: 328 SNT-HAP 311
           +++ H+P
Sbjct: 129 AHSPHSP 135


>AE014134-2739|AAF53547.2| 1413|Drosophila melanogaster CG31738-PA,
           isoform A protein.
          Length = 1413

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508 RRSQAAITAPSAQRH*LDGSVGATWDRTTHNTLTVSLALKHTHTRAREHLPRRCLHTRTH 329
           ++ Q  +  P+ Q     GSVGA        T T + A  H+H+ A  H      H + H
Sbjct: 74  QQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSH-----THPQPH 128

Query: 328 SNT-HAP 311
           +++ H+P
Sbjct: 129 AHSPHSP 135


>AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-PB,
           isoform B protein.
          Length = 1700

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508 RRSQAAITAPSAQRH*LDGSVGATWDRTTHNTLTVSLALKHTHTRAREHLPRRCLHTRTH 329
           ++ Q  +  P+ Q     GSVGA        T T + A  H+H+ A  H      H + H
Sbjct: 361 QQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSH-----THPQPH 415

Query: 328 SNT-HAP 311
           +++ H+P
Sbjct: 416 AHSPHSP 422


>AE014296-1869|AAN11890.1|  253|Drosophila melanogaster CG32080-PA
           protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 597 SLWQHLAFVHLKRQSRFNICSAARHQRCCSDVVRPRSPLH 478
           S W H    H    +    CS+  ++ C S V+RP S LH
Sbjct: 205 SRW-HRMLQHQTATTHLLTCSSPPYRHCSSGVLRPGSKLH 243


>AE014134-1082|AAF52374.2| 1196|Drosophila melanogaster CG9506-PA
           protein.
          Length = 1196

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
 Frame = -3

Query: 418 NTLTVSLALKHTHTRAREHLPRRCLHTRTHSNTHAPKVSTALCS*YT--*TRFTVPQP*I 245
           +TLTV L       RA +  PRRCL  ++  +   P     L +  T   T    P   I
Sbjct: 377 STLTVILK-PSPERRAPQPRPRRCLDRQSDEHAREPSQKRNLAAIRTMMPTEAYAPPKKI 435

Query: 244 SEIQQQRPATRSYYRTLTNHECTRYMSKLKSQN 146
              +Q+R    S       H  T + S L S+N
Sbjct: 436 RRTRQERTGADSQMFFQNEHLETLFYSWLSSEN 468


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,379,992
Number of Sequences: 53049
Number of extensions: 583819
Number of successful extensions: 1652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)