Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82058-7|CAB04871.2|  140|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81508-10|CAB04151.2|  140|Caenorhabditis elegans Hypothetical p...    28   4.8  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 456 TAASAPPGTARRTTLSPCH*HLNTHTRARASTSRDVVCTLARTQTRTPQ 310
           TA+SAP  TA  TT  P      T T    STS   V T     T T Q
Sbjct: 348 TASSAPASTAVVTTTMPVTTVQTTVTSIGTSTSPQAVVTTTGNPTTTAQ 396


>Z82058-7|CAB04871.2|  140|Caenorhabditis elegans Hypothetical
           protein T27C5.10 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 121 KPAVHKIDDFVILVYSY 171
           K  +HKIDDF++ +YSY
Sbjct: 4   KTFLHKIDDFLVEIYSY 20


>Z81508-10|CAB04151.2|  140|Caenorhabditis elegans Hypothetical
           protein T27C5.10 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 121 KPAVHKIDDFVILVYSY 171
           K  +HKIDDF++ +YSY
Sbjct: 4   KTFLHKIDDFLVEIYSY 20


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 396 HLNTHTRARASTSRDVVCTLARTQTRTPQKLALHFVVSIRRHV 268
           H   H R R+   + +  T+ R  + +P K  LH  V+++R++
Sbjct: 189 HHKDHRRGRSHERKIITSTIVRQASASPDK-KLHSTVTVKRNI 230


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 130 VHKIDDFVILVYSY 171
           +HKIDDF++ +YSY
Sbjct: 7   LHKIDDFLVQIYSY 20


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 141  NFMNSRLAESVRRKFFSLS*VNSLNE-ETKPRSTASYIQN 25
            + MN+R + ++RR  + LS V+SL+  E KP   +  ++N
Sbjct: 945  SLMNARSSSNIRRPGYGLSHVSSLSTFERKPAQMSCRVRN 984


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 141  NFMNSRLAESVRRKFFSLS*VNSLNE-ETKPRSTASYIQN 25
            + MN+R + ++RR  + LS V+SL+  E KP   +  ++N
Sbjct: 945  SLMNARSSSNIRRPGYGLSHVSSLSTFERKPAQMSCRVRN 984


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,901
Number of Sequences: 27780
Number of extensions: 276616
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)