Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    31   0.63 
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)...    29   1.9  
At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphat...    29   1.9  
At1g32420.1 68414.m04002 F-box family protein contains F-box dom...    28   5.9  
At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3)...    27   7.8  
At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containi...    27   7.8  
At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic ...    27   7.8  

>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 404 HGESVVRRAVPGGADAAVKSMPLCRWSGDRGLTTSLQ-QR--W*RAAEHILKRLCRFKWT 574
           HG ++   +V G A+  ++ +  C         TSL  QR  W  +  HILK+L   ++ 
Sbjct: 299 HGAALKYLSVIGAAETEIEKLRSCGGEDQCDCKTSLHLQRMPWSNSYSHILKQLIIARFP 358

Query: 575 NARCCQRERA 604
              C Q +RA
Sbjct: 359 KLLCIQVQRA 368


>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
           gibberellin-responsive protein 2 identical to SP|P46688
           Gibberellin-regulated protein 2 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 513 CSDVVRPRSPLHRHNGIDLTAASAPPGTARRTTLSPCH*HLNTH 382
           CS   R +  L   N         PPGT+  T L PC+  + TH
Sbjct: 49  CSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTH 92


>At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphate
           hydrolase, putative similar to diadenosine
           5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
           angustifolius] GI:1888557, [Hordeum vulgare subsp.
           vulgare] GI:2564253; contains Pfam profile PF00293:
           NUDIX domain
          Length = 216

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 582 LAFVHLKRQSRFNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGTARR 421
           L F+H  R+SR +  SA    RCCS +  P     R+ G+ L  +S    TA R
Sbjct: 34  LPFLHRCRKSRVSSSSA----RCCSSMESPPEGYRRNVGVCLMNSSKKIFTASR 83


>At1g32420.1 68414.m04002 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 302

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 266 HCPTTVNKRNPTTK 225
           HCPTTV+  NPTT+
Sbjct: 141 HCPTTVDIYNPTTR 154


>At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3) /
           gibberellin-responsive protein 3 identical to SP|P46687
           Gibberellin-regulated protein 3 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 513 CSDVVRPRSPLHRHNGIDLTAASAPPGTARRTTLSPCH*HLNT 385
           CS   RP   L   N         PPGTA    L PC+  + T
Sbjct: 49  CSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITT 91


>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = -1

Query: 567 LKRQSRFNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGTARRTTLSPCH*HLN 388
           +K Q  + I    +H  C  D+      L +   I       P G    T L+ CH H N
Sbjct: 507 MKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGN 566

Query: 387 T 385
           T
Sbjct: 567 T 567


>At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic
           subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069
           GI:5360595 from [Arabidopsis thaliana]; identical to
           cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
          Length = 387

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 543 ICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGTA-RRTTLSPC 403
           + S   H+  CS  V P+SP    +G  L +++ P  T  RRT  S C
Sbjct: 9   LTSQLNHEAVCSKFVLPKSPF--MSGSKLFSSNMPCSTVPRRTRRSHC 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,132
Number of Sequences: 28952
Number of extensions: 249716
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)