Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G19
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    28   1.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   9.0  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 244 LNKCSEL-FQNVKKEKCQDSTTDMGRGVICFGAFC*KHFFFAWH 372
           LN C EL F+NVKK        D+   + CF +   K  F+  H
Sbjct: 362 LNVCEELEFKNVKKSGYMQPLFDLTMPLGCFDSLETKEMFYLRH 405


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 IVPKCQKRKMSRLHNRYGKGCHLFRCILLKAFFFR 365
           I+P+C+K++ S  HN Y +  HL      +  FFR
Sbjct: 621 ILPRCEKKRRSVGHNSYKE--HLVLLTASRILFFR 653


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 267 PKCQKRKMSR-LHNRYGKGCHLFRCILLKAFF 359
           P  QKR     LH   G    LFRC+LL  FF
Sbjct: 91  PLSQKRPFPNFLHPFTGSELSLFRCLLLFFFF 122


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 504 KSESGGTHKFIGFFSMWNRIKPIQLT 427
           K+    +++ IGFF+  N I+P++ T
Sbjct: 452 KNNRSISYQIIGFFTRLNSIRPVEFT 477


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 93  IVTSDYLFIFLHNII*ICNVLR 158
           I+ +DY     HN++ +CN+++
Sbjct: 468 ILRNDYYVYLSHNLLTVCNIIK 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,643
Number of Sequences: 5004
Number of extensions: 60418
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)