Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G19
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 47 1e-05
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_9949| Best HMM Match : PetM (HMM E-Value=2.2) 35 0.062
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 34 0.082
SB_28924| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 28 7.1
SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017) 27 9.4
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +2
Query: 344 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNW 523
+ IF G++ + HP+ VI G ++FV + G+ + I K+P+ LW P S + +
Sbjct: 569 LRKIFSLWGLWCSNHPYTVIAGCIVFVGILAGGVGYYSIIKDPVKLWSAPQSRARQEKDL 628
Query: 524 YIKTFGTGLRLQNIIFTAN 580
+ F R + +I T N
Sbjct: 629 FDSKFSPFYRTEQLIITVN 647
>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = +2
Query: 296 TPQQIWEGVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPM 475
+P +W S+ + + + F +A++PW I + FV +G I +E
Sbjct: 103 SPHAVWLAFSTWYIRSLSNGFGWSSAHIARNPWITIVICIAFVGFCSVGFIWLKMENRAE 162
Query: 476 NLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIF 571
L++P DS D N K F RLQ +IF
Sbjct: 163 KLFIPQDSRATKDMNRASKHFTMDSRLQTVIF 194
>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 VHFVESIFFS-LGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYH 511
+H FF +G VA +PW I L V G IRF +E L++P DS
Sbjct: 1 MHEYTGRFFGFIGSKVATYPWITICICLTVVGGLACGFIRFKVENRTEKLYIPQDSQAIK 60
Query: 512 D 514
D
Sbjct: 61 D 61
>SB_9949| Best HMM Match : PetM (HMM E-Value=2.2)
Length = 299
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 VHFVESIFFS-LGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYH 511
+H FF +G VA +PW I L V G IRF +E L++P DS
Sbjct: 1 MHEYTGRFFGFIGSKVATYPWITICICLTVVGGLACGFIRFKVENRTEKLYIPQDSQAIK 60
Query: 512 D 514
D
Sbjct: 61 D 61
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 215 K*IWREIKSYSTSAVNCSKMSKKKNVKTPQQI 310
K IW++IK +S S N SK+ + K TPQ++
Sbjct: 648 KSIWQKIKKHSPSTENISKLGRPKRTATPQKL 679
>SB_28924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 274 VKKEKCQDSTTDMGRGVICFGAFC 345
V ++ C D+ +D+ V+C GA+C
Sbjct: 65 VLRQGCNDNASDLRASVVCSGAYC 88
>SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 221 IWREIKSYSTSAVNCSKMSKKKNVKTPQQIWEG-VSSVSVHFVESI 355
+W +ST+A+N S K+ V+ PQ+ + V +HFV S+
Sbjct: 74 VWVARTRFSTAAINPLDKSAKQFVEIPQKYLKNTVEQFVLHFVASL 119
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 264 VPKCQKRKMSRLHNRYGKGCHL-FRCILLKAFFF 362
+ +CQ+ ++ +HN Y CH+ C K F+
Sbjct: 93 INECQRDALAPIHNHYAHNCHVDAHCTNTKGSFY 126
>SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 456 WNRIKPI--QLTVTNNNVPKMTCH 391
W IKPI Q V NNN K+T H
Sbjct: 390 WTPIKPISTQFAVDNNNSTKLTTH 413
>SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017)
Length = 574
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 303 NRYGKGCHLFRCILLKAF 356
NR G+GCH+F+ L +AF
Sbjct: 311 NRLGRGCHVFKKDLSRAF 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,116,935
Number of Sequences: 59808
Number of extensions: 424126
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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