Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G19
(627 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei... 37 0.019
BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p pro... 37 0.019
AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein... 37 0.019
AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA... 37 0.019
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein. 37 0.026
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ... 37 0.026
BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p pro... 29 6.8
AE013599-3987|AAM70800.1| 499|Drosophila melanogaster CG30427-P... 29 6.8
AE013599-3986|AAF47295.2| 499|Drosophila melanogaster CG30427-P... 29 6.8
AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA... 29 6.8
>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
protein.
Length = 1299
Score = 37.1 bits (82), Expect = 0.019
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 362 SLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFG 541
+LG V KH +V+F +L ++ C+GL I LW+ + + KT G
Sbjct: 65 TLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVHQLWIQEGGGLEAELAYTQKTIG 124
Query: 542 --TGLRLQNIIFTAND----ILHPDVLI 607
Q +I T +D +LHP L+
Sbjct: 125 EDESATHQLLIQTTHDPNASVLHPQALL 152
>BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p
protein.
Length = 1287
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 341 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTN 520
F+E+ F G + A +P + V + G+ I +P+ LW P+S +
Sbjct: 337 FLETFFTKWGTYFASNPGLTLIAGASLVVILGYGINFIEITTDPVKLWASPNSKSRLERE 396
Query: 521 WYIKTFGTGLRLQNIIFTA 577
++ F RL+ II A
Sbjct: 397 FFDTKFSPFYRLEQIIIKA 415
>AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein
protein.
Length = 1287
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 341 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTN 520
F+E+ F G + A +P + V + G+ I +P+ LW P+S +
Sbjct: 337 FLETFFTKWGTYFASNPGLTLIAGASLVVILGYGINFIEITTDPVKLWASPNSKSRLERE 396
Query: 521 WYIKTFGTGLRLQNIIFTA 577
++ F RL+ II A
Sbjct: 397 FFDTKFSPFYRLEQIIIKA 415
>AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA
protein.
Length = 1287
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 341 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTN 520
F+E+ F G + A +P + V + G+ I +P+ LW P+S +
Sbjct: 337 FLETFFTKWGTYFASNPGLTLIAGASLVVILGYGINFIEITTDPVKLWASPNSKSRLERE 396
Query: 521 WYIKTFGTGLRLQNIIFTA 577
++ F RL+ II A
Sbjct: 397 FFDTKFSPFYRLEQIIIKA 415
>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
Length = 1286
Score = 36.7 bits (81), Expect = 0.026
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 362 SLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFG 541
+LG V KH +V+F +L ++ C+GL I LW+ + + KT G
Sbjct: 65 TLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVHQLWIQEGGRLEAELAYTQKTIG 124
Query: 542 --TGLRLQNIIFTAND----ILHPDVLI 607
Q +I T +D +LHP L+
Sbjct: 125 EDESATHQLLIQTTHDPNASVLHPQALL 152
>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
protein.
Length = 1286
Score = 36.7 bits (81), Expect = 0.026
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 362 SLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFG 541
+LG V KH +V+F +L ++ C+GL I LW+ + + KT G
Sbjct: 65 TLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVHQLWIQEGGRLEAELAYTQKTIG 124
Query: 542 --TGLRLQNIIFTAND----ILHPDVLI 607
Q +I T +D +LHP L+
Sbjct: 125 EDESATHQLLIQTTHDPNASVLHPQALL 152
>BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p
protein.
Length = 1169
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 317 GVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVP 490
G+S V +S F+ LGI +AKHP I +L + G + + +P L+ P
Sbjct: 4 GISCVDKTLNKS-FYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSP 60
>AE013599-3987|AAM70800.1| 499|Drosophila melanogaster CG30427-PD,
isoform D protein.
Length = 499
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 276 QKRKMSRLHNRYGKGCHLFRCILLKAFFFR---LASLWQSIH 392
QKR M R+ NR G + + ++A+FF+ +SLW ++
Sbjct: 379 QKRFMIRVQNRISVGLEVLQFFTMRAWFFKSDAYSSLWAMLN 420
>AE013599-3986|AAF47295.2| 499|Drosophila melanogaster CG30427-PA,
isoform A protein.
Length = 499
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 276 QKRKMSRLHNRYGKGCHLFRCILLKAFFFR---LASLWQSIH 392
QKR M R+ NR G + + ++A+FF+ +SLW ++
Sbjct: 379 QKRFMIRVQNRISVGLEVLQFFTMRAWFFKSDAYSSLWAMLN 420
>AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA
protein.
Length = 1169
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 317 GVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVP 490
G+S V +S F+ LGI +AKHP I +L + G + + +P L+ P
Sbjct: 4 GISCVDKTLNKS-FYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSP 60
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,761,185
Number of Sequences: 53049
Number of extensions: 624202
Number of successful extensions: 1502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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