Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G19
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    41   8e-04
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    40   0.001
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    38   0.008
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    30   1.6  
Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z50863-6|CAA90739.1|  250|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z50858-7|CAA90725.1|  250|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    28   6.3  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   6.3  
AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    28   6.3  
Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    27   8.3  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +2

Query: 335 VHFVESIFFSLGIFVAKHPWQVIFGTLLFVT-VSCIGLIRFH 457
           VH ++  F+ +G FV  HP + I G LL VT VSC+G +RFH
Sbjct: 10  VH-MQKFFYKVGYFVGTHPRKCI-GVLLLVTLVSCLGFLRFH 49


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 344 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWV 487
           ++ + F+LG  V ++ W +I    +   V C GL   HIE + + LWV
Sbjct: 116 IQKLLFALGNTVHRNAWSIILAVSMIFAVCCYGLQYVHIETDIVKLWV 163


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 341 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDS 499
           +++ +FF  GIFVAKH +  +   L    +S  GL    I  +   L+VP D+
Sbjct: 13  WMQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVPTDA 65


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 377 VAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKTFGTGLRL 556
           +A +P   I  ++L + V   GL+   +E +    + P DSD  ++T  +++ +G  +  
Sbjct: 14  LAAYPVYSILLSILSILVLSSGLVHIRLEPDIRKAFSPDDSDAGYETRVWLEYYGLDIYP 73

Query: 557 QN--IIFTA 577
           +    IFTA
Sbjct: 74  ERAFCIFTA 82


>Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical
           protein F11A5.5a protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 368 GIFVAKHPWQVIFGTLLF-VTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKT-FG 541
           G+F A +  + +   L + + V  I LIR   E++PM +  PP    +  +  YI + + 
Sbjct: 18  GLFFATYSKKAVKSPLFWMILVYSIFLIRAMHEEDPMEVPYPPAQINFRTSRKYISSNYA 77

Query: 542 TGLRLQNIIFTANDIL 589
           +  RL N +F    +L
Sbjct: 78  SSSRLGNHLFELASVL 93


>Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical
           protein F11A5.5b protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 401 IFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTNWYIKT-FGTGLRLQNIIFTA 577
           +F  +L  ++  + LIR   E++PM +  PP    +  +  YI + + +  RL N +F  
Sbjct: 33  LFWMILVYSIFTVFLIRAMHEEDPMEVPYPPAQINFRTSRKYISSNYASSSRLGNHLFEL 92

Query: 578 NDIL 589
             +L
Sbjct: 93  ASVL 96


>Z50863-6|CAA90739.1|  250|Caenorhabditis elegans Hypothetical
           protein F44A6.5 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 139 RYVMCCDSLESIFMLTLQKLFTKSYKINMAR 231
           R++M  D LES+F+ +++++ T   K+N A+
Sbjct: 36  RHIMGGDPLESLFLKSIRQVVTNYAKVNQAQ 66


>Z50858-7|CAA90725.1|  250|Caenorhabditis elegans Hypothetical
           protein F44A6.5 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 139 RYVMCCDSLESIFMLTLQKLFTKSYKINMAR 231
           R++M  D LES+F+ +++++ T   K+N A+
Sbjct: 36  RHIMGGDPLESLFLKSIRQVVTNYAKVNQAQ 66


>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 470 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 583
           P + W P   D +   + Y   FGT L + N ++TA++
Sbjct: 88  PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 470 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 583
           P + W P   D +   + Y   FGT L + N ++TA++
Sbjct: 88  PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 470 PMNLWVPPDSDFYHDTNWYIKTFGTGLRLQNIIFTAND 583
           P + W P   D +   + Y   FGT L + N ++TA++
Sbjct: 88  PSSCW-PYSYDAFKIASRYFPEFGTSLNVNNTVYTADE 124


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +2

Query: 317 GVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPD 496
           G  ++ V F E +       V KHP   +   L+     C G  +FH   + ++     D
Sbjct: 309 GKGNLEVQF-EGLCARYANAVIKHPLIFVSLGLIVAAACCSGNFKFHSLTHSVDQVSAAD 367

Query: 497 SDFYHDTNWYIKTFGTGLRLQNI 565
            +   +   +I +FG   R++ I
Sbjct: 368 GETRRNEKKFIHSFGPNHRIEQI 390


>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 344 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVP 490
           +E  F   G FVA+ P+  I    L   +S  G + FH + +  +++ P
Sbjct: 4   LERFFDWYGQFVARKPFFFILIPSLLTILSTYGFLSFHTQDDIWDIYAP 52


>Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical
           protein C17G1.4b protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 487 PARFRFLSRYKLVYQNIRHRPQTSKHYFHRK 579
           PA   FL     V  N +  PQ  KHYF RK
Sbjct: 574 PAAMTFLRDTLHVGPNDKVHPQVEKHYFSRK 604


>Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical
           protein C17G1.4a protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 487 PARFRFLSRYKLVYQNIRHRPQTSKHYFHRK 579
           PA   FL     V  N +  PQ  KHYF RK
Sbjct: 574 PAAMTFLRDTLHVGPNDKVHPQVEKHYFSRK 604


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 350 SIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVP 490
           S+F  LG  +  HP       LLF     +GL+  +   + + L+ P
Sbjct: 12  SLFRQLGFLICDHPLPFFVFPLLFTAAMGVGLLHLNPLSDAVYLFTP 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,964
Number of Sequences: 27780
Number of extensions: 346118
Number of successful extensions: 940
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)