Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G19
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.80 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 461 EKNPMNLWVPPDSDFYHDTNW 523
           +KNP+ LW  P  D     NW
Sbjct: 589 DKNPVQLWYVPSLDQVWILNW 609


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 318 PSHICCGVLTFFFFDILEQFTAL 250
           PSHI  G+L  FFF    Q  AL
Sbjct: 638 PSHIMAGLLDKFFFPKWLQVLAL 660


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 286 KCQDSTTDMGRGVICFGAFC*KH 354
           K  D  T +  G++ FGA+C  H
Sbjct: 405 KKYDCVTLLFSGIVGFGAYCAAH 427


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 286 KCQDSTTDMGRGVICFGAFC*KH 354
           K  D  T +  G++ FGA+C  H
Sbjct: 405 KKYDCVTLLFSGIVGFGAYCAAH 427


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 485 VPPDSDFYHDTNWY 526
           VPPD     D NWY
Sbjct: 29  VPPDMLHLIDANWY 42


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 515 YRDKNLNLAGPISSL 471
           +RD  L+  GPI SL
Sbjct: 93  WRDSRLSFLGPIKSL 107


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 282 RKMSRLHNRYGKGCHLFR 335
           + +S+ HNR    C++FR
Sbjct: 706 KALSKCHNRNVTTCNMFR 723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,710
Number of Sequences: 438
Number of extensions: 4407
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)