Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G19
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    56   3e-08
At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    45   5e-05
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    31   0.47 
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea...    31   0.63 
At3g23880.1 68416.m03001 F-box family protein contains F-box dom...    29   2.5  
At5g65740.1 68418.m08273 expressed protein                             29   3.3  
At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    28   5.8  
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    28   5.8  
At4g14970.1 68417.m02301 hypothetical protein                          28   5.8  

>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/91 (31%), Positives = 48/91 (52%)
 Frame = +2

Query: 296 TPQQIWEGVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPM 475
           TPQ+ W  +S+V  H   + +   GI+VA+HP  V+  ++  V + C+GLIRF +E  P 
Sbjct: 318 TPQRNWGQLSTVQGHLA-NFYGKYGIWVARHPTLVLCLSVSVVLLLCVGLIRFKVETRPD 376

Query: 476 NLWVPPDSDFYHDTNWYIKTFGTGLRLQNII 568
            LWV   S    +  ++        R++ +I
Sbjct: 377 KLWVGSGSRAAEEKQFFDTHLAPFYRIEQLI 407


>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 341 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIEKNPMNLWVPPDSDFYHDTN 520
           ++   + S G ++A++P  V+F ++  V   C GL  F +E  P  LWV P+S    +  
Sbjct: 291 YMAKFYRSYGSWIARNPSLVLFMSVAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKK 350

Query: 521 WYIKTFGTGLRLQNII 568
           ++        R++ +I
Sbjct: 351 FFDTHLSPFYRIEQLI 366


>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
 Frame = +2

Query: 221 IWREI----KSYSTS-AVNCSKMSKKKNVKTPQQIWEGVSSVSVHFVESIFFSLGIFVAK 385
           +WR++     SYS+   +  S +S K N++ P  I + +S +S   +    FSLG+F+A 
Sbjct: 469 VWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAGLGMAMFSLGLFMAL 528

Query: 386 HP 391
           +P
Sbjct: 529 NP 530


>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to retinoblastoma A associated protein; RbAp48
           (GI:3309245) [Xenopus laevis]
          Length = 350

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 299 PQQIWEGVSSVSVHFVESIFFSLGIFVAKHPWQV--IFGTLLFVTVSCIGLIRFHIEKNP 472
           P +IW+  SS     + S  FS G       WQ+   +G     T+ C+  +  H+ K  
Sbjct: 65  PNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHVGKIN 124

Query: 473 MNLWVP 490
             LW P
Sbjct: 125 CVLWCP 130


>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
 Frame = +2

Query: 224 WREIKSYSTSAVNCSKMSKKKNVKTPQQIWEGVSSVSVHF-----VESIFFSLGIFVAKH 388
           WR + S +  A+  + + +     T  +   GV + S +      + S++ +  ++V++H
Sbjct: 41  WRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEH 100

Query: 389 PWQVIFGTLLFVTVSCIGLIRFHIE-KNPMNLWVP 490
             +++      V  +C GL+ FH++    + LW P
Sbjct: 101 DGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNP 135


>At5g65740.1 68418.m08273 expressed protein 
          Length = 216

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -1

Query: 444 KPIQLTVTNNNVPKMTCHGCFATKMPSEKKMLSTKCTETDDTPSHICC 301
           KP+ L V ++   ++ C  C+A  +P+++++ +   T TD T  +I C
Sbjct: 126 KPLGLQVEDDQ-QQVECGICYAQFLPTDEELGARSGTRTDYTCENISC 172


>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 624 VMSXISMSTSGCNISFAVKIMF*SLRPVPNVLIYQFVS**KSESGGTHKFIGFFSMWNRI 445
           V+  IS+ ++  N ++  ++ F S    P ++   FV   KS    THKF+ +  M NR 
Sbjct: 527 VVKRISLESTKNNEAYLTELDFFSRFAHPRII--PFVG--KSLESATHKFLVYKYMLNRD 582

Query: 444 KPIQLTVTNNNV 409
            P  L   +N++
Sbjct: 583 LPSSLFYKSNSL 594


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 624 VMSXISMSTSGCNISFAVKIMF*SLRPVPNVLIYQFVS**KSESGGTHKFIGFFSMWNRI 445
           V+  IS+ ++  N ++  ++ F S    P ++   FV   KS    THKF+ +  M NR 
Sbjct: 527 VVKRISLESTKNNEAYLTELDFFSRFAHPRII--PFVG--KSLESATHKFLVYKYMLNRD 582

Query: 444 KPIQLTVTNNNV 409
            P  L   +N++
Sbjct: 583 LPSSLFYKSNSL 594


>At4g14970.1 68417.m02301 hypothetical protein
          Length = 1286

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 157  DSLESIFMLTLQKLFTKSYKINMARN*IILNKCSELFQNVKKEKCQDSTTD 309
            D+ +  F       F   YK  +  N  ILNK  +   + K++ CQ  TT+
Sbjct: 1145 DARDHEFPTLCAATFRGWYKTLLEENLAILNKLVKTVSSEKRQNCQPKTTE 1195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,358
Number of Sequences: 28952
Number of extensions: 298815
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)