Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0208 + 1780275-1781123                                           29   2.4  
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527...    29   4.3  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   5.6  
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443...    28   7.5  
12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232     27   9.9  
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    27   9.9  

>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 368 REFIRPMVHHPFCWFWVRMSPALLMSPLLCPFIVIFSHSSWFTPQKKCNREIARKPQNAL 189
           R F++  +H P C+F V   P    SP  CP I   S +   T      +EI     +++
Sbjct: 216 RNFVK--IHVPSCYFPVHGCPRSPSSPTGCPTIGELSRADQSTVTSTIRQEIPEASNSSI 273

Query: 188 TT 183
            T
Sbjct: 274 IT 275


>07_01_0698 -
           5269329-5269579,5270673-5270928,5271158-5271725,
           5271757-5272763
          Length = 693

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 223 LHFFCGVNQLECEKITMNGHSNGDIN 300
           LHF CGVN+L    +   G   GD N
Sbjct: 532 LHFICGVNELVSGPVRSLGEKVGDYN 557


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 286 CCVRSL*SFHTRAGLHRRRNAIARSRENHKMH*LQ 182
           CC RS   F  RAG HRRR  + R R +   H L+
Sbjct: 142 CCDRSAPPFPPRAG-HRRRPRLHRHRHDLPFHALR 175


>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
            4430555-4432052,4432199-4432217,4432469-4432675,
            4432814-4433065
          Length = 1363

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 503  HLDKYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVER 640
            H D    +D  G +   +E+K+ G K +I +S + SGR     +ER
Sbjct: 1295 HFDVTFDIDGNGVLNVTAEDKDTGRKNNIIIS-NRSGRLNKEEIER 1339


>12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232
          Length = 463

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 329 WFWVRMSPALLMSPLLCPFIVIFSHSSWF 243
           W W++   A  +   L P++++  HS W+
Sbjct: 293 WTWLQEELATRVDRKLTPWLIVLMHSPWY 321


>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 455 EPASGNANDSMIYLRSHLDK 514
           EPA G  ND++++LR H D+
Sbjct: 449 EPAVGFVNDNLVFLRVHSDQ 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,104
Number of Sequences: 37544
Number of extensions: 306453
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)