Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G17
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                     104   5e-23
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               29   2.5  
SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)                 28   7.6  

>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score =  104 bits (250), Expect = 5e-23
 Identities = 48/92 (52%), Positives = 65/92 (70%)
 Frame = +2

Query: 374 RYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCE 553
           +YLTAETFGFK+N++G SL+KKQ W+LE   G A    IYL+SHL +YL  D  GN+ CE
Sbjct: 258 KYLTAETFGFKLNSDGVSLRKKQTWSLEQVDGEA----IYLKSHLGRYLTADPKGNLCCE 313

Query: 554 SEEKEPGSKFHISVSDDNSGRWALRNVERGYF 649
           +EE+E  +KF + + D   G+WAL++V   YF
Sbjct: 314 AEERESNAKFTVEIKD---GKWALKSVHGAYF 342


>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 220 RLHFFCGVNQLECEKITMNGHSNGDINSAGDILTQNQQ 333
           R H   G+  LE E++T  GHS GD+    D+   +++
Sbjct: 94  RHHAKAGIYNLEEEELTHLGHSLGDVGKFDDVRLSDEE 131


>SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 464 SGNANDSMIYLRSHLD-KYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWA 622
           +G   + +  +   L+ K +AVD+ GNV C+S + +  +K  +++   N+  WA
Sbjct: 288 TGCTKEDLFEMEKKLEVKLVAVDALGNVMCDSGKYK--TKARVTIPCHNNHAWA 339


>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
          Length = 475

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 209 SRSRDCISSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTSRKDGGP 349
           SR    IS++V  +  +K+S+     MAT     T+SP  ++  GGP
Sbjct: 223 SREAPPISTSVEDAEMLKKSRNLPAWMATGGQATTASPPVTKPVGGP 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,582,171
Number of Sequences: 59808
Number of extensions: 355854
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)