Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G17
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    30   1.2  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      30   1.2  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    28   5.0  

>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 545 SRYRSCRLLGTCPSVTSSRSCYHWHSRKQAR 453
           +RY  C     CP  ++S SC H HS K  R
Sbjct: 350 ARYSMCVAAKACPVRSNSLSCKHRHSNKTGR 380


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 545 SRYRSCRLLGTCPSVTSSRSCYHWHSRKQAR 453
           +RY  C     CP  ++S SC H HS K  R
Sbjct: 350 ARYSMCVAAKACPVRSNSLSCKHRHSNKTGR 380


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
 Frame = -3

Query: 267 DLFTLELVYTAEEMQSRDREKTTK-CT---NYKNIIIIYISLHFSSIRLTLNCRN-LS*I 103
           +L+ LE +   E++   D+ K +K C    +Y NII I+   HF +I  T+   + L+ +
Sbjct: 202 ELWCLETIDDFEQLTRMDQWKKSKECKVFGHYFNIIPIHYLFHFENIEATVEYFSALNAL 261

Query: 102 TVKKNCRFILSGEFLKCKIFINACVSHSCSR 10
            ++ N   +    F +C  +I   +S   +R
Sbjct: 262 NIRNN--LLGRSTFQQCIFWIYGTISVEVAR 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,541
Number of Sequences: 27780
Number of extensions: 269963
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)