Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.48 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.64 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 567 SFSSDSQVTLP-KLSTARYLSKCDLK*IMLSLAFPEAGSRVQICF 436
           +F+ +  V L  K  T RYLS C+   + LSL+  E  ++V+I F
Sbjct: 14  AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTE--TQVKIWF 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 428 LKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK 580
           +K ++I  LE      +  +  LRSHLDK+L   S            PGSK
Sbjct: 13  VKDEKIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPGPGSK 63


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 370 PESLSGRWSTILSAGSG*GC 311
           P+SL+  W T+LS  SG  C
Sbjct: 347 PQSLTDMWLTMLSMISGATC 366


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 370 PESLSGRWSTILSAGSG*GC 311
           P+SL+  W T+LS  SG  C
Sbjct: 315 PQSLTDMWLTMLSMISGATC 334


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 380 LTAETFGFKINANGTSLKKKQIW-----TLEPASGNANDSMIYLRS 502
           LT    G  +  NG  +  +  W     T++PA  NA  +  YL+S
Sbjct: 373 LTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKS 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,942
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)