Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G14
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      29   0.52 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   0.90 
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.6  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    27   2.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   8.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.4  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   8.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.4  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 74  YLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNL 253
           Y+H+V   N    + +F  L+ SG  C N +T+ A    +     F+T+        +N+
Sbjct: 27  YVHEVMESNPSTNLILFPELITSGYECGNTFTQIAEIAGEGP--SFKTMSNLAAKYHVNI 84

Query: 254 LW 259
           ++
Sbjct: 85  IY 86


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +2

Query: 176 ANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRF 355
           + +K    K    T  +   +NK   +WT+    +T+ +  S Y  L    ++ +  K F
Sbjct: 245 SEKKEKKTKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHF 304

Query: 356 KSDG 367
             +G
Sbjct: 305 SVEG 308


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +2

Query: 44  INSKVYINIKYLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLE 223
           I S +   ++ L K+  + ++ +    + LLM+ +VC   Y R   +++ +A V  + L+
Sbjct: 370 IPSTLSFFLEILTKLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQEHHNAIV--QALQ 427

Query: 224 KPFRMNKLNL 253
             F + KLN+
Sbjct: 428 NLFTLIKLNI 437


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 158 NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHD 328
           NK  R  N +ND A          F +N LNL WT       E   + L    +LHD
Sbjct: 253 NKNIRQKNTENDAAG---------FTINDLNLAWTIEPHAFVEQYPQKLRMPFLLHD 300


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 290 KLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADR 469
           KLK++     + D++ +   R K    DKE L   +L  + S I  V    +H    +  
Sbjct: 507 KLKTMKDGKAVVDEKAVLSDRSKKIKVDKEALESYKLNSEQSGIYRVNYSADHLKKLSQI 566

Query: 470 QKDHPAFNSAMD 505
             + P + S  D
Sbjct: 567 AVEKPDYLSVED 578


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 21/93 (22%), Positives = 44/93 (47%)
 Frame = +2

Query: 182 EKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKS 361
           E ++++K+  R +EK  ++  L+L  +      +  K+ +  S  + H K + + K+ + 
Sbjct: 249 ELSNESKLAIRCIEKNLKLILLHLAKSTGASSSSVEKIHAYLSGQIYHTKVDESLKKRQY 308

Query: 362 DGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPK 460
           +G     +  A  R K S + S   L+E   P+
Sbjct: 309 EG----NISAASKRVKSSAVQS---LVERMQPQ 334


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 482 PAFNSAMDDHINR--SIFXDKKLNMLWSKAEF 571
           PAF+    + +     +F D K N++W  AEF
Sbjct: 193 PAFDLVATEDVTTVTDLFQDWKNNLIWESAEF 224


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 6/28 (21%), Positives = 19/28 (67%)
 Frame = +2

Query: 23   YDTFMKLINSKVYINIKYLHKVFTMNTH 106
            Y+  + + + K+++N+ YL+ ++++  H
Sbjct: 1454 YNLVLDIDSPKIFVNLNYLYSIWSIFVH 1481


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 308 SDLMLHDKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPK 460
           SD  L + + + Y R   +G + +        R  S I+ V GLL+HFD K
Sbjct: 348 SDEELFEDDPLEYVRRDLEGSNSDS-------RARSAIVLVRGLLDHFDQK 391


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 260 TKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLXEAELRRKLSNI 421
           TK +    +   K L++ L L   E    K+ +SD    +G    +  +KLS++
Sbjct: 637 TKLKSTCAKASRKRLFNQLELSPPESFMEKKARSDENQLDGNKIKDDNQKLSSV 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,069
Number of Sequences: 5004
Number of extensions: 37465
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)