Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G14
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0834 - 20167554-20167716,20169488-20169598,20169716-201698...    32   0.30 
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    28   4.9  
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130...    28   4.9  
12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477     27   8.6  
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    27   8.6  
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744...    27   8.6  
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540     27   8.6  

>04_03_0834 -
           20167554-20167716,20169488-20169598,20169716-20169801,
           20169901-20170011
          Length = 156

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 104 HLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLT 283
           H+  F+FI   M   V    Y  +   +ND A + + ++EKP  ++ L+ L    ++R  
Sbjct: 13  HISYFIFILKQMECNVRAENYICTIEIRNDFAILSYFSIEKPLDLDTLSWLLRHGEERGK 72

Query: 284 EPKLKSLYSDLMLHDKEEI-TYKRFKSDGG 370
             + K++   L++     I   +R K  GG
Sbjct: 73  HMECKAVAKALLMACNLPIGRRERVKDRGG 102


>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
            20878057-20878177,20878414-20878451,20879096-20879218,
            20879308-20879505,20880270-20880356
          Length = 1578

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = +2

Query: 158  NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKL-KSLYSDLMLHDKE 334
            NK    ANE N D+ V+    E P   +K+ LL T+  + L E KL +      M   K 
Sbjct: 1465 NKQGNDANE-NGDSPVN----EVPELQSKIQLLETRLAEALEENKLYRGQLKSPMPEGKS 1519

Query: 335  EITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQK 475
                K  K +  DK    E+EL+     +++V   L++ + +A R++
Sbjct: 1520 --ASKDGKENDDDKISQLESELKDMQERLLNV--SLQYAEVEAQREE 1562


>09_06_0108 -
           20912236-20912364,20912470-20912601,20912718-20913071,
           20913161-20913407,20913489-20913565,20913971-20914045,
           20914118-20914219,20914329-20914447,20914861-20914984,
           20915081-20915131,20915247-20915345,20915839-20915949
          Length = 539

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 335 EITYKRFKSDGGDKEGLXEAELRRK 409
           E+TYK FK +  +KEG+  A++  K
Sbjct: 385 EVTYKPFKEEDMEKEGIDNADVVEK 409


>12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477
          Length = 234

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 191 DDAKVDFRTLEKPFRMNKLNLLWTK 265
           D AKV+ RT+ + +RM++LN L T+
Sbjct: 174 DYAKVEVRTVIEAYRMHELNFLTTE 198


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +2

Query: 218 LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEIT-YK-RFKSDGGDKEGLXE 391
           ++ P  +  LN +W    Q L+E   +  Y +     K+  T Y  ++ SD G KE   +
Sbjct: 93  VKTPRGLRSLNSVWA---QHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQ 149

Query: 392 AELRRKLSNIMSVYGLLEHFDPKADRQK 475
            E  +K ++I+ V    +    K  +QK
Sbjct: 150 LEKMKKYASIVRVIAHTQIRKMKGLKQK 177


>09_04_0548 -
           18469636-18470037,18471164-18472705,18474052-18474474,
           18474874-18474999
          Length = 830

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDG 367
           MNK   +W +  + +T+ +  + Y  L    +E +  K F  +G
Sbjct: 263 MNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEG 306


>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
          Length = 699

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDG 367
           MNK   +W +  + +T+ +  + Y  L    +E +  K F  +G
Sbjct: 263 MNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEG 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,846
Number of Sequences: 37544
Number of extensions: 193111
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)