Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G14
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          31   0.71 
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)          30   1.6  
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       28   5.0  
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        28   5.0  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    27   8.7  

>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
 Frame = +2

Query: 230 FRMNKLNLLWTKAQQR-LTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLXEAELRR 406
           FR+NKLN++W KAQ   +++ KL++L  +L+ HD++E+ +K  K  GGD +G  E +LR 
Sbjct: 29  FRINKLNMIWKKAQNTVMSDNKLQNLKRELLQHDEKELKWKELKLHGGDIDGKMEMKLRN 88

Query: 407 KLSNIMSVYGLLEHFDPKADRQKDHPAFNSAMDDHINRSI--FXDKKLNMLWSKAEFSG- 577
            L  I+  +GL       AD   +      A D ++ R +  F D++L  LWS A   G 
Sbjct: 89  NLIRILEKHGL----SRIADAVLEGHGTGYATDTNVVRDMNSFGDRRLEQLWSLASDQGK 144

Query: 578 FTAEXL 595
           FT   L
Sbjct: 145 FTKAEL 150


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +2

Query: 167  TRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEP-KLKSLYSDLMLHDKEEIT 343
            T   ++ ND+A+  F  +++  ++N   L W  A Q  ++P KLKS++ ++   +   I 
Sbjct: 1323 TMDVDDDNDEARTPFVDVDEHHKLNDEELRWESAGQ--SQPSKLKSMFHEMDSEEPATIE 1380

Query: 344  Y---KRFKSDGGDKEGLXEAELRR 406
            Y   +R K+    K    + E+ R
Sbjct: 1381 YTVVRRTKTTETQKNWGGQPEVNR 1404


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +2

Query: 218 LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLXEAE 397
           LE+  +MN  +++  +  QRL  P+ +    D+  H    +      S   DKEG     
Sbjct: 211 LERGLKMNVQSVIVPRISQRLANPEFQP--GDIR-HYVPRLRIAGVGSLECDKEGQVTLT 267

Query: 398 LRRKLSNIMSVYGLLEHFDPKADRQ-KDHPAFNSAMD 505
           L   + NI+ V  LL + +  A++Q KD    +SA D
Sbjct: 268 LTNPVENIVKV-SLLPYIENTAEKQSKDSSEEDSAKD 303


>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
          Length = 902

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 155 ENKYTRSANEKNDDAKVDFRTLEKP 229
           EN+YT+  N +N++A+ + RTL  P
Sbjct: 355 ENRYTKEKNVENEEAQEEDRTLNSP 379


>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 323 HDKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDH 481
           HDKEE+  KR + +        + E + K  +I   YGLL       +R  D+
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGLLPSKSSGYERLDDN 175


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 323 HDKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDH 481
           HDKEE+  KR + +        + E + K  +I   YGLL       +R  D+
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGLLPSKSSGYERLDDN 175


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 218  LEKPFRMNKLNLLWTKAQQRLTEPKLKS-LYSDLMLHDKEEITYKRFKSDGGDK 376
            +E  F +  +     K    LT  KLK  L S     DKEE T +R +   GDK
Sbjct: 1395 MEADFSVQSITERLAKKNAFLTRAKLKEYLASARAPGDKEEFTMRRLRELRGDK 1448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,368
Number of Sequences: 59808
Number of extensions: 251921
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)