Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G14
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    31   0.47 
AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine re...    29   3.3  
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical...    27   7.7  

>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 8   KEENNYDTFMKL-INSKVYINIKYLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANE 184
           +E+N  D   KL +N  +  +  +L    T+ T   I VF+   M+G+  E KY    NE
Sbjct: 451 QEQNTVDLAFKLSLNELLLTSCTFLKVTSTLLTDKEINVFLKHWMAGLKPELKYLSIENE 510

Query: 185 KND 193
           + D
Sbjct: 511 EQD 513


>AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine
           receptor, class i protein36 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 77  LHKVFTMNTHLMIFVFISLLMSGIVC 154
           L KVF + +H ++ V+ SLL+S IVC
Sbjct: 82  LVKVFNIYSHYLLAVWTSLLISEIVC 107


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 371 DKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDHPA--FNSAMDDHIN 517
           ++EG+ EA++  KL        L +H D      KDH    +   M D +N
Sbjct: 551 EEEGMVEAKIFEKLVTARRALSLFQHHDGVTGTAKDHVVLDYGQKMIDALN 601


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 371 DKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDHPA--FNSAMDDHIN 517
           ++EG+ EA++  KL        L +H D      KDH    +   M D +N
Sbjct: 549 EEEGMVEAKIFEKLVTARRALSLFQHHDGVTGTAKDHVVLDYGQKMIDALN 599


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
 Frame = +2

Query: 155 ENKYTRSANEKNDDAKVDFRT------LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDL 316
           E K T    EKN+DA  + +T      +EKP  + K   +  KA++      +K   +D 
Sbjct: 563 EKKKTEGEEEKNEDAAGEEKTEEKTEEVEKPVVVKKTKPVEPKAKKINVALTIKETKTDN 622

Query: 317 MLHDKEEIT-YKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDHPAFN 493
           +  ++EE+T  K+   D   KE   E   R +  N +   GLL  +D  A R +D   + 
Sbjct: 623 IDLNEEEVTAAKKVLGDFEQKE--KEKHDREEAMNRLE--GLL--YD-LAVRLEDGEEYA 675

Query: 494 SAMDDHINRSIFXDKKLNMLWSKAEFS 574
               +   ++I  +  +  LW + + S
Sbjct: 676 EYATEEEKKAILEEVAVLKLWFEDDVS 702


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
 Frame = +2

Query: 155 ENKYTRSANEKNDDAKVDFRT------LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDL 316
           E K T    EKN+DA  + +T      +EKP  + K   +  KA++      +K   +D 
Sbjct: 579 EKKKTEGEEEKNEDAAGEEKTEEKTEEVEKPVVVKKTKPVEPKAKKINVALTIKETKTDN 638

Query: 317 MLHDKEEIT-YKRFKSDGGDKEGLXEAELRRKLSNIMSVYGLLEHFDPKADRQKDHPAFN 493
           +  ++EE+T  K+   D   KE   E   R +  N +   GLL  +D  A R +D   + 
Sbjct: 639 IDLNEEEVTAAKKVLGDFEQKE--KEKHDREEAMNRLE--GLL--YD-LAVRLEDGEEYA 691

Query: 494 SAMDDHINRSIFXDKKLNMLWSKAEFS 574
               +   ++I  +  +  LW + + S
Sbjct: 692 EYATEEEKKAILEEVAVLKLWFEDDVS 718


>AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical
           protein Y9C9A.1 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 242 KLNLLWTKAQQRLTEPKLKSLYSDLMLHDK-EEITY 346
           K+N   TK  +R+T  +L+ +  D   H++ E+IT+
Sbjct: 294 KVNTALTKTSERITTSQLQRMIQDATTHERIEKITF 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,944
Number of Sequences: 27780
Number of extensions: 203847
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)