Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G14
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    28   4.1  
At5g01030.2 68418.m00006 expressed protein                             28   5.4  
At5g01030.1 68418.m00005 expressed protein                             28   5.4  
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    27   7.2  

>At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat; identical to cDNA membrane-associated
           salt-inducible protein like GI:2632060
          Length = 412

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 179 NEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRL 280
           N+K DDAK   RT++K F  + LN  W K ++ L
Sbjct: 361 NKKRDDAKGLIRTVKKKFPPSFLN-AWKKLEEEL 393


>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 547 VQFFIXENTPIYVIIHCRIKCWVIFLSICLRIKMLQ*TIDRHNVTE 410
           +Q  + +NT + V +    KCW  F    L I+ +  T+DR  V +
Sbjct: 151 LQSLVGQNTDLTVFLSRVEKCWQDFCDQMLMIRSIALTLDRKYVIQ 196


>At5g01030.2 68418.m00006 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 326 DKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGL 439
           +K+EI    +KS G D +G+   + RR  SN  S  GL
Sbjct: 156 NKQEIATCSYKSSGRDHKGVEPRKSRRTHSNRESTTGL 193


>At5g01030.1 68418.m00005 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 326 DKEEITYKRFKSDGGDKEGLXEAELRRKLSNIMSVYGL 439
           +K+EI    +KS G D +G+   + RR  SN  S  GL
Sbjct: 156 NKQEIATCSYKSSGRDHKGVEPRKSRRTHSNRESTTGL 193


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = +2

Query: 236 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLXEAELRRKLS 415
           + K N +   +   L E + + L S    +D+    Y+R      ++  L +  L+RKL+
Sbjct: 435 IEKFNDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLT 494

Query: 416 NIMSVYGLLEHFDPKADR 469
            IM   G L+H D   +R
Sbjct: 495 EIMGKSG-LKHIDHDVER 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,429,107
Number of Sequences: 28952
Number of extensions: 178226
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)