Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G13
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 188 2e-48
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 186 1e-47
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 186 1e-47
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 40 0.001
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 29 2.7
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote... 27 8.3
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 8.3
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 8.3
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 188 bits (459), Expect = 2e-48
Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 5/175 (2%)
Frame = +2
Query: 38 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
+ WFGS+K A++RT SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
LGEK +R+V+M GV +V S K KDE+I+EGN +E VS S ALI Q V KDI
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDI 175
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 186 bits (452), Expect = 1e-47
Identities = 87/175 (49%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
Frame = +2
Query: 38 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q V KDI
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDI 175
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 186 bits (452), Expect = 1e-47
Identities = 87/175 (49%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
Frame = +2
Query: 38 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q V KDI
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDI 175
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/157 (19%), Positives = 70/157 (44%)
Frame = +2
Query: 50 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 229
+ Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 230 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 409
+ +NM+ GV+KGF+ K+ V + T +G ++ L + V
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPV 156
Query: 410 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 520
KM ++ ++ + + G ++ AA +++
Sbjct: 157 KMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRK 193
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +2
Query: 11 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 190
G + + K +++K+ DG VHV ++ + ++ +LK+N + +++ + P
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247
Query: 191 LLKV 202
L V
Sbjct: 248 LFNV 251
>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
kinase, putative
Length = 999
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 391 LPQEVTYLN--N*ITLSGDTVNGEVSIHSTHLVLEAFSYSFNHV 266
+P+EV L N + LS + +GE+ + +L L + S+NH+
Sbjct: 539 IPKEVGILPVLNYLDLSSNQFSGEIPLELQNLKLNVLNLSYNHL 582
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 238 GGKLLFGSEPFLN-LQETRVYHANVNSQVFKVP 143
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 62 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 172
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,513
Number of Sequences: 28952
Number of extensions: 252952
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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