Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G09
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    40   2e-04
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.44 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   1.0  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    28   1.0  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   3.1  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   4.1  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    25   7.2  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQI---WGDLQEGIEQVYKK--QYMVKRRYIDLYTHVYNYC 584
           M+T N N   +P+ +K +D +   W  L+ G+ Q++++  + M   +Y++LYT ++NYC
Sbjct: 1   MTTLNTNDKDLPIVKK-YDSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYC 58


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 531 YMVKRRYIDLYTHVYNYCTSVHHHS 605
           Y++ + Y+  YTH+Y Y  +++H +
Sbjct: 172 YVLTKSYLAKYTHIYRYYQTIYHQA 196


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 200 YGSVFSCATACQFCLVFPLNLMALYFTLKALNELF 96
           YG +F+    C  C++F         TL+ +NEL+
Sbjct: 433 YGYIFAACNLCAACIIFLFAHETKGLTLEEINELY 467


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 200 YGSVFSCATACQFCLVFPLNLMALYFTLKALNELF 96
           YG +F+    C  C++F         TL+ +NEL+
Sbjct: 433 YGYIFAACNLCAACIIFLFAHETKGLTLEEINELY 467


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 218 FNALRHYGSVFSCATACQFCLVFPLNLMALYFTLKALNELFQTRLIIILRLVSA 57
           F+ ++  G  +   +AC  C++   N     F L+A+NE      +  LR V A
Sbjct: 576 FSLMKISGMAYPQCSACSECIINEWNREKWMFVLRAINEPDYVEELCGLREVQA 629


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 492 DLQEGIEQVYKKQYMVKRRYIDLYTHVYNY 581
           D  +G+E VYKK+YM KR   D+  H+ ++
Sbjct: 145 DAVQGVE-VYKKKYMSKR---DIQEHIQDF 170


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 496 FKRESNKFTKNSTWSRDDT*ICILTYTIIVRRFIIIAPVA 615
           F+R +N+  K   W      +CI+   II+   +II P+A
Sbjct: 77  FRRGANRVRKKMWWKDMRMRLCII-IGIIILLVVIIVPIA 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,608
Number of Sequences: 5004
Number of extensions: 48024
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)