Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G09
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007...    30   1.4  
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284...    29   4.3  
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398...    27   9.9  
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297...    27   9.9  

>03_06_0603 +
           34999083-34999703,35000092-35000177,35000400-35000796,
           35000906-35001154,35001522-35001749,35002524-35002973,
           35003848-35003961,35004171-35004216,35004408-35004574
          Length = 785

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 444 RPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHV 572
           RP+VP  QKD + +  +L++ I +  +  +M KR+++ L+  V
Sbjct: 592 RPKVPGLQKDIEVLKSELEKFIAKYGQDGFMPKRKHLRLHGRV 634


>05_01_0363 -
           2846133-2846441,2846820-2846885,2847184-2847276,
           2847487-2847600,2847762-2847849,2848116-2848199,
           2848312-2848411,2848886-2848949,2849339-2849419,
           2849944-2850000,2850188-2850387,2850668-2850971,
           2851518-2851707,2851922-2852032,2852111-2852192,
           2852443-2853046
          Length = 848

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 534 CTVFCKLVRFP--LEDRPISDQSPFAAAALGVCWHY 433
           CT++C L+R P  L ++   +Q+  A   L  C+HY
Sbjct: 564 CTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCFHY 599


>08_01_0451 +
           3979323-3979566,3979649-3980012,3980112-3980330,
           3980713-3980872,3981680-3981817,3982161-3982448
          Length = 470

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   VQITDVGRYLPTYLKLSGRNQS 71
           V+I +   Y+P Y K+SGRN++
Sbjct: 157 VRILETRNYIPIYEKISGRNET 178


>01_04_0018 +
           15128174-15128316,15128445-15128544,15129573-15129758,
           15129877-15129924,15130006-15130209,15130476-15130565,
           15130667-15130747,15130827-15130889,15131794-15131832,
           15131914-15132000,15132103-15132252,15132331-15132386,
           15132493-15132775,15132989-15133132,15133233-15133451,
           15133528-15133695,15133868-15133969
          Length = 720

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +3

Query: 447 PQVPLRQKDFDQIWGDLQEGIEQVY------KKQYMVKRRYIDLYTHVYNYCT 587
           P++P+   D +  W D+  G+ ++          + V   Y+ LYT VYN CT
Sbjct: 5   PRIPV--VDLEDGWRDVLAGVAKLKCILDGSNVVHFVPDEYMHLYTTVYNMCT 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,729
Number of Sequences: 37544
Number of extensions: 261804
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)