Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G09
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)                37   0.012
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     30   1.4  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   28   7.6  

>SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)
          Length = 385

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQ 530
           M+T  AN P   LRQ + D+IW DL+EGI+ VY +Q
Sbjct: 63  MATRGAN-PH-GLRQINLDEIWDDLKEGIQHVYNQQ 96


>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 527 FFVNLFDSLLKIAPYLIKVLLPQRHLGSVGITS 429
           +FVN F SL  IA YL  + L + HL ++ ITS
Sbjct: 323 YFVNCFYSLFYIAFYLQDIALLRTHLAALMITS 355


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 185 SCATACQFCLVFPLNLMALYFTLKALNELFQTRLIIILRLVSA*QFQVGR*VPTYICNLD 6
           +C T C    V PLNL+    T      +  +  +I+L L+S    Q G  + +Y+  L+
Sbjct: 551 TCNTGCVSKYVIPLNLLRSTKTFNIQYGMCISNYMILLNLLSDQDIQYGMCISSYMILLN 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,082
Number of Sequences: 59808
Number of extensions: 334304
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)