Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G09
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein pr...    81   4e-15
BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.             81   4e-15
BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.             81   4e-15
AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.             81   4e-15
AC005229-1|AAM49153.1|  263|Homo sapiens cullin 1 protein.             81   4e-15
U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.               77   4e-14
U83410-1|AAC51190.1|  745|Homo sapiens CUL-2 protein.                  30   8.3  
BC110901-1|AAI10902.1|  745|Homo sapiens CUL2 protein protein.         30   8.3  
BC009591-1|AAH09591.1|  745|Homo sapiens cullin 2 protein.             30   8.3  
AL392046-4|CAI13165.1|  216|Homo sapiens cullin 2 protein.             30   8.3  
AL392046-3|CAI13164.1|  706|Homo sapiens cullin 2 protein.             30   8.3  
AL392046-2|CAI13163.1|  745|Homo sapiens cullin 2 protein.             30   8.3  
AF126404-1|AAD23581.1|  745|Homo sapiens cullin 2 protein.             30   8.3  

>BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein
           protein.
          Length = 776

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH 602
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH  
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQS 59

Query: 603 SAGSSSRVP 629
           +    + VP
Sbjct: 60  NQARGAGVP 68


>BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH 602
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH  
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQS 59

Query: 603 SAGSSSRVP 629
           +    + VP
Sbjct: 60  NQARGAGVP 68


>BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH 602
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH  
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQS 59

Query: 603 SAGSSSRVP 629
           +    + VP
Sbjct: 60  NQARGAGVP 68


>AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH 602
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH  
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQS 59

Query: 603 SAGSSSRVP 629
           +    + VP
Sbjct: 60  NQARGAGVP 68


>AC005229-1|AAM49153.1|  263|Homo sapiens cullin 1 protein.
          Length = 263

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH 602
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH  
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQS 59

Query: 603 SAGSSSRVP 629
           +    + VP
Sbjct: 60  NQARGAGVP 68


>U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.
          Length = 752

 Score = 77.4 bits (182), Expect = 4e-14
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +3

Query: 423 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVH 596
           MS++ +  P   L+Q   DQIW DL+ GI+QVY +Q M K RY++LYTHVYNYCTSVH
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVH 57


>U83410-1|AAC51190.1|  745|Homo sapiens CUL-2 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>BC110901-1|AAI10902.1|  745|Homo sapiens CUL2 protein protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>BC009591-1|AAH09591.1|  745|Homo sapiens cullin 2 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>AL392046-4|CAI13165.1|  216|Homo sapiens cullin 2 protein.
          Length = 216

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>AL392046-3|CAI13164.1|  706|Homo sapiens cullin 2 protein.
          Length = 706

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>AL392046-2|CAI13163.1|  745|Homo sapiens cullin 2 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


>AF126404-1|AAD23581.1|  745|Homo sapiens cullin 2 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 462 RQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 590
           R  DFD+ W  L   I+ V   +Y+ +  + D ++ +Y  C +
Sbjct: 6   RVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVA 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,466,575
Number of Sequences: 237096
Number of extensions: 1554259
Number of successful extensions: 2307
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)