Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G08
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   140   1e-34
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   139   2e-34
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   136   2e-33
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.53 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.8  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   3.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   5.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   5.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   6.6  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   8.7  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  140 bits (338), Expect = 1e-34
 Identities = 62/108 (57%), Positives = 73/108 (67%)
 Frame = +2

Query: 182 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 361
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 362 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLE 158



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +1

Query: 64  ACGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 177
           A GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 12  AKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  139 bits (337), Expect = 2e-34
 Identities = 62/108 (57%), Positives = 73/108 (67%)
 Frame = +2

Query: 182 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 361
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 362 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLE 158



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +1

Query: 64  ACGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 177
           A GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 12  AKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  136 bits (328), Expect = 2e-33
 Identities = 59/108 (54%), Positives = 73/108 (67%)
 Frame = +2

Query: 182 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 361
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIP 110

Query: 362 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           PPFD               LKP R YC +GRLS E+GWKY+++V KLE
Sbjct: 111 PPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLE 158



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +1

Query: 64  ACGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 177
           A GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF
Sbjct: 12  AKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFF 49


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 177
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 360 GHPSYVRSLLRAFLPRSVLCGIMP 289
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 97  LPPDGPADDHRPSITMALLLKPVIF 23
           L PDG   + R S+ ++L++ PV+F
Sbjct: 303 LNPDGHVSELRNSLPLSLVISPVMF 327


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 170  TSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 298
            +S  N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1319 SSCGNRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 139 VRCEQINISGNFFSEQTQAYVIPA*EVQRESCSW 240
           VRC  +++SGN+ +      V+   EV    C W
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVW 415


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 339 SLLRAFLPRSVLCGIMPLTVFHRILDGAL 253
           S L AFLP+  LC ++PL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 104 PRSFSKGTKLLWFAANKSISLATSLVNKL 190
           P SFSKG  LL  A++   S   SLV K+
Sbjct: 604 PESFSKGDILLGLASDGVHSNGYSLVRKI 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,140
Number of Sequences: 5004
Number of extensions: 43850
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)