Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G08
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 137 6e-33
07_01_0071 - 522920-523063,524125-524212,524289-524677 134 5e-32
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 111 4e-25
11_04_0056 + 12942802-12942920,12943022-12943115 58 3e-09
02_05_0914 + 32702753-32703078,32703940-32704000,32704132-327041... 30 1.2
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 1.6
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 3.8
01_05_0038 + 17484046-17484288,17484540-17484674 28 5.0
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 27 6.6
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 27 8.8
06_03_0281 - 19109567-19109691,19110479-19110615,19111274-191118... 27 8.8
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 137 bits (331), Expect = 6e-33
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Frame = +2
Query: 152 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 328
+ I ++ LV K+K + FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ A
Sbjct: 44 EEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAA 103
Query: 329 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
L RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y D +R+LE
Sbjct: 104 LARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELE 162
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
H+LGRLA++IAK LL G +VVVVRCE+I +SG ++
Sbjct: 19 HMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQK 56
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 134 bits (323), Expect = 5e-32
Identities = 56/107 (52%), Positives = 71/107 (66%)
Frame = +2
Query: 185 KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 364
K+K + FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PP
Sbjct: 56 KMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPP 115
Query: 365 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
P+D L+PG YC +G+LS E+GW Y D +R+LE
Sbjct: 116 PYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELE 162
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
H+LGRLA+++AK LL G +VVVVRCE++ ISG ++
Sbjct: 19 HMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQK 56
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 111 bits (266), Expect = 4e-25
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +2
Query: 221 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 400
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 401 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 496
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 314 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 481
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>02_05_0914 +
32702753-32703078,32703940-32704000,32704132-32704149,
32704301-32704399
Length = 167
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 63 GLWSSAGPSGGSHRQGPSRREQSCCGSLRTNQYLWQL 173
G+WS G GG G RR + G LR Y W +
Sbjct: 44 GMWSGGGGGGG----GKGRRRERGDGMLRAEAYFWDV 76
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 254 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 373
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 221 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 367
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>01_05_0038 + 17484046-17484288,17484540-17484674
Length = 125
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 59 RWPVVICWAVWRQSS---PRSFSKGTKLLWFAANK 154
RW + CW +W + + PRS + L W+ + +
Sbjct: 84 RWKLTSCWDLWNEKALLPPRSLQPHSLLQWWRSRE 118
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 87 SGGSHRQGPSRREQSCCGSLRTNQYL 164
SGG HR+ SRR G L TN+ L
Sbjct: 270 SGGEHRRKTSRRRSLIIGWLTTNKQL 295
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 47 GHSDRWPVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLATSLVNKLKLMSFL 208
GH D P+ A+ R S+PR + L A + + +AT+ V +LK +S L
Sbjct: 389 GHCDHLPLSDDPALARVSAPRLEALAWDGLEHIACREVVVATATVRRLKKISLL 442
>06_03_0281 -
19109567-19109691,19110479-19110615,19111274-19111828,
19112784-19112989
Length = 340
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 249 WKGPRAGFTLHLLRRNDISLSLFTKEV--ARDIDLFAANHNNFVP 121
W+ P A ++L+ ++ SLS + V A+ I +F NHN F+P
Sbjct: 214 WQ-PCATHAINLMLKDTGSLSPVDQVVSSAKKISMFFCNHNRFLP 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,086
Number of Sequences: 37544
Number of extensions: 322305
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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