Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G08
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 29   2.2  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   5.1  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             27   6.8  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 293 MIPHKTERGKNALRRLRTYDGCPPPFD 373
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 240 PRAGFTLHLLRRNDISLSLFTKEVARDIDLFAANHNNFVP-FEKDLGDDC 94
           P    ++H L  +D++ SL TKE     +LF    ++  P   K+ GD C
Sbjct: 93  PEEQHSIHELLLDDLAKSLDTKERHASFELFQLRRDDIKPHLNKEYGDLC 142


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 449 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 342
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 68  VVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 169
           V +C ++W  + P  F    +L+W+  + S+S++
Sbjct: 268 VSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 158  ISLATS-LVNKLKLMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGMIPHKTER---GK 322
            I+L T  +VN   ++  LR    V   R     +     + ++T+  +  HKT R    K
Sbjct: 849  INLRTGDIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHYRTLHTVPAHKTFRFVYNK 908

Query: 323  NALRRLRTYDGCPPP 367
               R +RTY   PPP
Sbjct: 909  RVRRGMRTYPYAPPP 923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,960
Number of Sequences: 59808
Number of extensions: 356178
Number of successful extensions: 1558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)