Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G08
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 144 4e-35
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 144 4e-35
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 30 1.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 30 1.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 30 1.1
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 30 1.1
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 30 1.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.0
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 6.0
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 27 6.0
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 27 6.0
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 144 bits (348), Expect = 4e-35
Identities = 66/129 (51%), Positives = 85/129 (65%)
Frame = +2
Query: 119 KGTKLLWFAANKSISLATSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 298
+G K++ A + + +KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+
Sbjct: 30 QGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGML 89
Query: 299 PHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 478
PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSHE+GW+
Sbjct: 90 PHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQ 148
Query: 479 YRDVVRKLE 505
++DVV KLE
Sbjct: 149 FQDVVAKLE 157
Score = 53.6 bits (123), Expect = 8e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNF 174
HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF
Sbjct: 15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNF 48
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 144 bits (348), Expect = 4e-35
Identities = 66/129 (51%), Positives = 85/129 (65%)
Frame = +2
Query: 119 KGTKLLWFAANKSISLATSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 298
+G K++ A + + +KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+
Sbjct: 30 QGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGML 89
Query: 299 PHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 478
PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSHE+GW+
Sbjct: 90 PHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQ 148
Query: 479 YRDVVRKLE 505
++DVV KLE
Sbjct: 149 FQDVVAKLE 157
Score = 53.6 bits (123), Expect = 8e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNF 174
HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF
Sbjct: 15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNF 48
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 3602 PSDPSDPTDPQITKARYLKPKILTASRK 3629
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 4131 PSDPSDPTDPQITKARYLKPKILTASRK 4158
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 3812 PSDPSDPTDPQITKARYLKPKILTASRK 3839
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 3602 PSDPSDPTDPQITKARYLKPKILTASRK 3629
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 4131 PSDPSDPTDPQITKARYLKPKILTASRK 4158
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 3812 PSDPSDPTDPQITKARYLKPKILTASRK 3839
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 91 PDGPADDHRPSITMALLLKPVIFTTKRK 8
P P+D P IT A LKP I T RK
Sbjct: 3021 PSDPSDPTDPQITKARYLKPKILTASRK 3048
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -2
Query: 488 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 321
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -2
Query: 500 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 327
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 326 HSCHA 312
H HA
Sbjct: 595 HGHHA 599
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 499 LTNNITVFPSNFMGQSAYMTVITARFQTE 413
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 63 GLWSSAGPSGGSHRQGP 113
GL SAGP+GG+ R+GP
Sbjct: 156 GLPGSAGPAGGNGRRGP 172
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 63 GLWSSAGPSGGSHRQGP 113
GL SAGP+GG+ R+GP
Sbjct: 150 GLPGSAGPAGGNGRRGP 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,140
Number of Sequences: 27780
Number of extensions: 257364
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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