Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G08
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.34 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   3.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21   VKMTGFSNKAIVIDGLWSSAGPSGGSH 101
            +++ GF  K ++ DG+ SS   SG S+
Sbjct: 1051 LEVEGFETKLVLEDGITSSGSDSGSSN 1077


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 179 LKKLPEILICSQRTTTTLFPSRRTL 105
           LK L + L+C ++ +TT+ P+ + +
Sbjct: 68  LKLLSDGLMCVEKVSTTIVPTTQEI 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -1

Query: 312 SVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLF 181
           SV+C +    VFH      + W      F       ++I+ SLF
Sbjct: 164 SVVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLF 207


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 PARGPFHFRAPSKI 271
           P  G F F+AP KI
Sbjct: 56  PPVGKFRFKAPQKI 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 325 ILATLCFVWDHASYSLP*NLRWSSKMERSTSRIHVAPLT 209
           +  TL  VW    + +   ++W+ K+   TS    A LT
Sbjct: 209 LAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLT 247


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 325 ILATLCFVWDHASYSLP*NLRWSSKMERSTSRIHVAPLT 209
           +  TL  VW    + +   ++W+ K+   TS    A LT
Sbjct: 262 LAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLT 300


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 PARGPFHFRAPSKI 271
           P  G F F+AP KI
Sbjct: 56  PPVGKFRFKAPQKI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,115
Number of Sequences: 438
Number of extensions: 3125
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)