Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G07
(363 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 133 4e-32
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 126 4e-30
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 30 0.53
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 30 0.53
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 30 0.53
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl... 27 2.8
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 4.9
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 4.9
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co... 26 6.5
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative... 26 8.6
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 133 bits (321), Expect = 4e-32
Identities = 58/88 (65%), Positives = 69/88 (78%)
Frame = +1
Query: 37 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 216
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 217 KRTVAGGAWVFSTTAASSCRSAVRRLRE 300
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 126 bits (304), Expect = 4e-30
Identities = 56/88 (63%), Positives = 66/88 (75%)
Frame = +1
Query: 37 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 216
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 217 KRTVAGGAWVFSTTAASSCRSAVRRLRE 300
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 29.9 bits (64), Expect = 0.53
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 21 GXVYQNGQTYQKGWNYW 71
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 29.9 bits (64), Expect = 0.53
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 21 GXVYQNGQTYQKGWNYW 71
G Y +G+TYQ W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 29.9 bits (64), Expect = 0.53
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 21 GXVYQNGQTYQKGWNYW 71
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At4g28730.1 68417.m04109 glutaredoxin family protein contains
glutaredoxin domain, Pfam:PF00462
Length = 174
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 67 TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 162
+ +G+R S+RK V + V ++K CS+C
Sbjct: 62 SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 242 QAPPATVLLHRLQDQMPTQERF 177
+ PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 242 QAPPATVLLHRLQDQMPTQERF 177
+ PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896
>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit
Length = 573
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/73 (24%), Positives = 39/73 (53%)
Frame = -2
Query: 227 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRREAP*RVPYLPVIPTFLV 48
+++ H ++D R+I+ P++ C+++S+F T R EA + + + + ++
Sbjct: 27 SLMEHTIEDAESIIHRWIS--PEHVHSSSFCFISSLFSTENREEAKRFIDAVTTLHSGMI 84
Query: 47 RLAILVNXSDTKV 9
RL I VN + K+
Sbjct: 85 RL-ISVNPTSMKL 96
>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
strong similarity to ferredoxin--nitrite reductase
[Nicotiana tabacum] GI:19893; contains Pfam profiles
PF03460: Nitrite/Sulfite reductase ferredoxin-like half
domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
domain
Length = 586
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 193 GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 303
G +S KRC+ + AWV + C++ + R++
Sbjct: 286 GFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDL 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,100,385
Number of Sequences: 28952
Number of extensions: 141924
Number of successful extensions: 446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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