Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G06
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    75   5e-15
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.42 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   1.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   2.2  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   6.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.8  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.0  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +3

Query: 225 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 401
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 402 STNQADGHNSDTYL 443
           ST QA G+NSDT L
Sbjct: 67  STGQAPGNNSDTLL 80



 Score = 31.1 bits (67), Expect = 0.10
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 385 GTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHILV 498
           G+S    P     T+L P     A+Y DPFRRG++ILV
Sbjct: 65  GSSTGQAPGNNSDTLLKPV----AMYNDPFRRGDNILV 98


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 347 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 243
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 159 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 275
           H KIE+N + +S P ++ S    L    L  +  + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 168 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 347
           ++DN  + S     +S N+ LS +    +  +P+PA  +  T +  D +    R    T 
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351

Query: 348 NFIPKAPKD 374
           +FI  + K+
Sbjct: 352 SFIANSEKE 360


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 286 RILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR-IFGLSSILVCAVSA 146
           ++    +G  LY++S   DS    E VKTG  R +  +S   V  VSA
Sbjct: 256 KVKRVSTGEVLYKISGKWDSEMSVESVKTGETRPLLDVSKHDVYLVSA 303


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 246 SVAFWTALRSGSWLKPAPIESSDYLLFWYAL 154
           S+ FW AL SG+ L    + SS   L+ YA+
Sbjct: 878 SIHFWIALWSGNSLFSLKLPSSFSFLWGYAI 908


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 25  EAIETFYAPTKPFVNTFSRNIQHSHRG 105
           E  +T   P K F+N   RN+Q  +RG
Sbjct: 36  EKEKTKLRPNKVFLNNMVRNVQSHNRG 62


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 380 RQIFGSFRYEIQGAIFAPQVFARAVD-PNV 294
           R I  SFR    G +FA  V AR +D PN+
Sbjct: 333 RSITESFRKCQSGILFATDVVARGMDFPNI 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,436
Number of Sequences: 5004
Number of extensions: 49769
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)