Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G06
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 7e-19
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2) 29 2.3
SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7) 29 2.3
SB_1657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08) 28 5.4
SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3) 27 9.4
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 90.6 bits (215), Expect = 7e-19
Identities = 41/68 (60%), Positives = 51/68 (75%)
Frame = +3
Query: 240 LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQAD 419
+L +Y L D++ A YIW+DGSGE +RCK RTL+ PK+ +DLPIWNFDGSST QA+
Sbjct: 14 VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPKSHEDLPIWNFDGSSTAQAE 72
Query: 420 GHNSDTYL 443
G NSD YL
Sbjct: 73 GCNSDVYL 80
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 448 PRAIYKDPFRRGNHILV 498
P I+KDPFR GN+ILV
Sbjct: 82 PINIFKDPFRGGNNILV 98
>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 10 SRPPREAIETFYAPTKPFVNTFSRNIQHSHRGNISRHNRALPVSKW 147
S PP A E F +P V T + I HS + + R P KW
Sbjct: 658 SIPPMRAFEQFLVRKRPAVGTANYQIHHSAEDMLQKRRRLCP--KW 701
>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
Length = 2527
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 234 WTALRSGSWLKPAPIESSDYLLFWYALYQPF 142
W GSWL+ P+ +LLF Y Q F
Sbjct: 1880 WEDTEEGSWLREYPVTLIQFLLFLYNNVQQF 1910
>SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)
Length = 231
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 67 NTFSRNIQHSHRGNISRHNRAL 132
NT + IQHS+ G + HN AL
Sbjct: 110 NTITDRIQHSNMGEVDNHNHAL 131
>SB_1657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +3
Query: 243 LSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADG 422
+S +++L + A+ +L +D + ++ K+ + P D+P +G S AD
Sbjct: 1 MSWFSELAVKAESLLEK---VDNTAANVLTKEEQQGYFRNIPLDVPESGDEGVSQPPADL 57
Query: 423 HNSDTYLXTSCYLQGSIPSRKSHP 494
+S T + + + S P+R P
Sbjct: 58 SSSSTRVKDTSQIGPSAPTRPRLP 81
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 22 REAIETFYAPTKPFVNTFSRNIQHSHRG 105
R+A+E KP++N F+R+ Q S+ G
Sbjct: 2154 RDAVENGQVDLKPYLNCFTRHNQKSYHG 2181
>SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)
Length = 523
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 237 TLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 380
TL + +L P+ +L TY ++ +HLR ++ L++I KA P
Sbjct: 20 TLTGKVGELESPS-ALLWTYFFLSQHYDHLRDTEKALDYINKAIDHTP 66
>SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)
Length = 452
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 185 DSIGAGFNQLPERSAVQNATESIQ*SSTAG*QDSRHLHLDR 307
D + + + LP S + A +S + + TAG +DSR LDR
Sbjct: 38 DPVSSHYRTLPSESQRERALDSSESALTAGSEDSR-CRLDR 77
>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 300 WIDGSGEHLRCKDRTLNFI 356
+I GS EHL C DRT FI
Sbjct: 1090 YICGSPEHLHCDDRTKLFI 1108
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -2
Query: 193 DRIFGLSSILVCAVSAILKQVRHDYVLKCSLDASVEYCAKTYLRKVLS 50
DR S++ +V A+ +R D + S+D SVE+CAK LR +LS
Sbjct: 898 DRCAKALSVVDLSV-ALSVALRVDLSVDLSVDLSVEHCAKA-LRVILS 943
>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 KILSGPVLTNSPNAVLSKTLLSR--YNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFI 356
+ LS PVL+ S ++ ++R ++ LP+ + T + + S HL+ D+ N +
Sbjct: 543 RCLSAPVLSESDPRLMLLYDVNRADHSLLPILDQEANGTLAFFEKSSTHLKTDDQEFNIL 602
Query: 357 PK 362
P+
Sbjct: 603 PQ 604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,004
Number of Sequences: 59808
Number of extensions: 370721
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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