Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G03
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)                   27   7.9  

>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 174 SITCDIRYFVYYYFNEALLKVIYLSLISCARFKTIT 67
           SITC + YFV+Y     ++ ++ L +IS  R++ +T
Sbjct: 100 SITCKVFYFVFY--TVPVVSLLTLLIISLERYRAVT 133


>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -3

Query: 401 TALRLPHRLTPRLEIPPPHRIH*KSHKFHYLLRMHLIESMLSFKISISHTRHHGFRATPY 222
           T L   H +  R   P  HR    +  FH  L  HL  +  S +++   T      A P 
Sbjct: 719 TKLLTDHGVEVRRAEPGHHRSQASAESFHCWLAQHLFRAQYSKELASGETNREWVTALPI 778

Query: 221 IFT 213
           + +
Sbjct: 779 VIS 781


>SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 397 RYVYRIVLHRDSRYRHRTVYTK-NHTNSTIFS 305
           RY +  +  R +RY HRT++T+  + +STIF+
Sbjct: 110 RYEHSTISTR-TRYEHRTIFTRTRYEHSTIFT 140


>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
          Length = 855

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 171 ITCDIRYFVYYYFNEALLK 115
           +TC +R+  ++YF EAL K
Sbjct: 329 VTCGVRHLKFWYFEEALNK 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,109
Number of Sequences: 59808
Number of extensions: 246240
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)