Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G03
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   1.7  
AF025452-5|AAK71872.1|  336|Caenorhabditis elegans Serpentine re...    28   3.0  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      27   5.3  
AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine re...    27   9.2  

>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 265  RSVTRGTTALGRRRIFLHLTDEIFSIRPSRLDYVR 161
            R + RGTT  G   +     D IF IRPS + + R
Sbjct: 2684 RMLVRGTTTHGDGGVHTSFFDHIFDIRPSNVAFSR 2718


>AF025452-5|AAK71872.1|  336|Caenorhabditis elegans Serpentine
           receptor, class i protein29 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 150 FVYYYFNEALLKVIYLSLISCARFKTI 70
           F Y YFN A + +I+L L +    KTI
Sbjct: 187 FYYTYFNSAYIFIIFLVLTAAGTLKTI 213


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 204 MRYFRYGRHVSITCDIRYFVYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQ 43
           +R+ RY   ++  CD+    Y   +  L+ +++  L SC         FR+ NQ
Sbjct: 450 VRFVRYLIAINCNCDLMQPQYLIISGILIVLMFALLFSCCMVALGEYKFRMANQ 503


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 180 HVSITCDIRYF--VYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQIK 37
           ++++ C I  F  ++YYF  A  + IY  LIS  RF  ITS+  +  + K
Sbjct: 86  NMNMGCPINLFHALHYYF--AYTQYIYNFLISYNRFCAITSLLDIEKRWK 133


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 204 MRYFRYGRHVSITCDIRYFVYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQ 43
           +R+ RY   ++  CD+    Y   +  L+ +++  L SC         FR+ NQ
Sbjct: 450 VRFVRYLIAINCNCDLMQPQYLIISGILIVLMFALLFSCCMVALGEYKFRMANQ 503


>AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein52 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 322 NSTIFSECT*LNPCYHLKYRSVTRGTTALGRRRIFLHLTDEIFSI 188
           NS +       NP Y+   +  ++ T  LG +RIFL +   IF I
Sbjct: 2   NSLLIYGSVQANPLYNCSAKPASQWTDELGTQRIFLGVILIIFGI 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,983
Number of Sequences: 27780
Number of extensions: 184786
Number of successful extensions: 445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)