Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G03
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 HKISNIARNRDVTAVSKISHRL 210
           H IS + +   ++ V K+SH L
Sbjct: 129 HNISALCKELGISVVQKVSHTL 150


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -3

Query: 350 PHRIH*KSHKFHYLLRMHLIESMLSFKISISHTRHH 243
           PH  H  +   H+     L  S     I I HT HH
Sbjct: 430 PHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 159 IRYFVYYYFN 130
           I YF++ YFN
Sbjct: 19  INYFIFLYFN 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,517
Number of Sequences: 438
Number of extensions: 2185
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)