Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G02
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                      127   3e-30
06_02_0140 + 12255418-12255512,12257514-12257793                      127   3e-30
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    109   5e-25
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   3.7  
01_03_0147 - 13125065-13126679,13126802-13127664                       26   8.6  

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  127 bits (306), Expect = 3e-30
 Identities = 62/113 (54%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
 Frame = +2

Query: 8   GKSAINXVVTREYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKFL 187
           G +    VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +
Sbjct: 7   GAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHI 66

Query: 188 WSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 340
           WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 67  WSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  127 bits (306), Expect = 3e-30
 Identities = 62/113 (54%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
 Frame = +2

Query: 8   GKSAINXVVTREYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKFL 187
           G +  + VVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +
Sbjct: 9   GGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHI 68

Query: 188 WSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 340
           WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 69  WSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  109 bits (263), Expect = 5e-25
 Identities = 59/122 (48%), Positives = 77/122 (63%), Gaps = 18/122 (14%)
 Frame = +2

Query: 29  VVTREYTVNLHKRLHGV----------------GFKKRAPXAIKEIRKFAEKQMGTPDIR 160
           VVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT DIR
Sbjct: 15  VVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIR 74

Query: 161 VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTEN 334
           +D +LNK +W+ G+R+VP           ND+ED+  +L++LVT   +P   +KGL T+ 
Sbjct: 75  IDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKV 134

Query: 335 VD 340
           V+
Sbjct: 135 VE 136


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 50  VNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPD 154
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 210 TFLTPLDQRNLFKRVSTRMSGVPICFS 130
           ++LT L  RNL + +  R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,208
Number of Sequences: 37544
Number of extensions: 149617
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)