Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G02
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  42   2e-04
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   2.9  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +2

Query: 56   LHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 229
            +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 230  XXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 349
                  N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810  RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849



 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = +2

Query: 5   KGKSAINXVVTREYTVNLHKRLHGVGFKKR 94
           KG+SAIN VVTREYT+NLHKR+HG+    R
Sbjct: 777 KGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +2

Query: 206 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 331
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 201 TPLDQRNLFKRVSTRMSGVPICFSANF 121
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,517
Number of Sequences: 59808
Number of extensions: 192446
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)