Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G02
         (379 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    22   6.5  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    22   6.5  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    22   8.6  

>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 62  KRLHGVGFKKRAPXAIKEIR 121
           +RLH  GF  R P  +++++
Sbjct: 96  RRLHAAGFCARRPRKVRKLQ 115


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 263 NLHHHYVFVKASHGH 219
           N+H H +F    HGH
Sbjct: 425 NIHLHALFSAVEHGH 439


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 62  KRLHGVGFKKRAPXAIKEI 118
           +RLH  GF  R P  ++++
Sbjct: 24  RRLHAAGFCARRPRKVRKL 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,122
Number of Sequences: 2352
Number of extensions: 6350
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)