Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G01
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.4
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 1.8
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 3.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 5.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.5
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.3
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 7.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 9.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 9.6
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.6
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Frame = +2
Query: 410 RSMLQQFHHL-GNLRCTPTIQQAMQ----PXNPGVCPPANQ-NPAPILTQNPNMGYGFPP 571
R+ Q+ ++ G+ TP + M N P A P+P+++Q Y FPP
Sbjct: 691 RNQYSQYDNVAGSASNTPDVHSVMHNKVASSNATSLPAAGTATPSPVVSQQQPQPYAFPP 750
Query: 572 LNTPNMPYYMSNQNPYTG--YGTQPQQ 646
+ Y PY +G QPQQ
Sbjct: 751 MYPIPYVSYGYGTMPYNNNKFG-QPQQ 776
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 386 RSPLNLLNRSMLQQFHHLGNLRCTPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGF 565
R P N S+L FH G + +PGV +N +P+ T N + G+
Sbjct: 192 RRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSRKEN-SPLYTVNRHKTEGY 250
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 1.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 435 WWNCWSIERFNR 400
WWNCW+ ++F R
Sbjct: 359 WWNCWTWDQFAR 370
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 544 ILSKYGCRILVSGRTNSWVXGLHS 473
ILS C+ L +G+ N WV G H+
Sbjct: 562 ILSGGLCKKLKNGKENQWVWGFHA 585
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 401 LLNRSMLQQFHHLGNLRCTPTIQQAMQPXNPGVCPPANQNPAPILT 538
LL+ S L HL T + + + P P PPA+ + +P+L+
Sbjct: 227 LLSVSALSSSSHLQPTSATSSSSR-LYPSRPAPTPPASSSSSPLLS 271
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 488 NPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSN 607
+P PP PAP++T + P N PN+ + +N
Sbjct: 729 SPVTTPPLPTAPAPVITSRHALVNNQFPTNNPNILDHKAN 768
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 157 LIIHNLPADTSYADVKSLIHS 219
LI+ NLP D +++ SLIHS
Sbjct: 210 LILGNLPVDYKISELLSLIHS 230
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 7.3
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 368 SLKTDKRSPLNLLNRSMLQQFHHLGNLRCTPTIQQAMQPXNPGVCPPANQNPAPILTQNP 547
S K + + P +N +M QFH ++ TP+ + AM CP + +P+ Q
Sbjct: 183 SEKAEWQPPTGSVNSNMPFQFHQSSSVPSTPS-EVAM---GHNFCPMSRNDPSLQSIQQT 238
Query: 548 NMGYGFPPLNTPNMPYYMS 604
N G+ + N+P+ Y S
Sbjct: 239 N-GF-YSGHNSPHTNYSAS 255
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 545 PNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQPQQAQS 655
P+MGY P ++ P M Q PY GY + S
Sbjct: 1314 PDMGYQQPMMSNYYDPMQMQQQTPY-GYNQTGMEGYS 1349
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 373 ENRQKKPVEPVESFNAPTVPPLRQPKMYTNNTAS 474
EN+Q P + S + P +PP P + N + S
Sbjct: 107 ENQQSVPTVSIASPSTPELPPSSSPLLPPNGSES 140
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 482 PXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMP 592
P P + PP+ + PI ++ P + PP P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.0 bits (52), Expect = 9.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 432 WNCWSIERFNRFNGLLLSVFNDQLMSIDEDTVDFSNNYSSVMFISNTNCYLLTSIVLRHK 253
+ C S +R G+L S N M D T F + S+V+ + T+ ++ TS R
Sbjct: 258 FRCLS-KRAEILKGVLAS--NVIAMQTDSYTRHFLSTCSNVLGLETTSTHIDTSDGFRVV 314
Query: 252 VI*NHISEPAF*MYQRFN 199
V +H+S +Y R N
Sbjct: 315 VFSSHVSIDVPRVYSRCN 332
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 329 EKSTVSSSMDINWSLKTDKRSPLNLLNRSMLQQFHH-LGNLRCTPTIQQAMQPXNPGVCP 505
E+ +SS I WS +DK + L LN S + +H+ L P++ + + +
Sbjct: 221 EEEVLSSPSTIWWSPDSDKIAFLK-LNESEIPTYHYPLYTAELDPSLPEFDYNKDMAIKY 279
Query: 506 PANQNPAP 529
P NP P
Sbjct: 280 PKPGNPNP 287
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 488 NPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQPQQ 646
N V PP NP P TQ Y + P P + QN +PQ+
Sbjct: 421 NYDVNPPLPLNPLPSNTQQSESTYEYSARQLPKPP-VQAWQNENLSSNNKPQE 472
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 491 PGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQP 640
PGV P P P PN+ PP+ P M P+ GY P
Sbjct: 501 PGVPLP----PIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVP 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,599
Number of Sequences: 5004
Number of extensions: 60892
Number of successful extensions: 195
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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