Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G01
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 34 0.11
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 32 0.35
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 30 1.4
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 29 3.3
02_05_0814 - 31970558-31971126,31971242-31971413 29 3.3
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 29 3.3
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 4.3
01_02_0007 + 10132380-10133201 29 4.3
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 28 5.7
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 5.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 5.7
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 28 5.7
10_01_0225 - 2395100-2395323,2395358-2395499 28 7.5
12_02_1226 - 27182423-27182768,27182855-27183765 27 9.9
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 27 9.9
04_03_0904 + 20717005-20718087 27 9.9
02_01_0529 - 3846489-3847268 27 9.9
01_07_0082 - 40965947-40967023 27 9.9
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 545 PNMGYGFPPLNTP--NMPYYMSNQNPYTGYGTQP 640
P GYG+PP P NMPY PY GY QP
Sbjct: 353 PQPGYGYPPRGPPPQNMPY----SQPYGGYPQQP 382
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMP 592
P AM P PG+ + NPA + NPN+ +P MP
Sbjct: 262 PATNPAMNPVTPGIVTVPSTNPATGYSNNPNLPPLYPEPTPVTMP 306
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 479 QPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPY 619
QP P P N P P Q+P GY TPN PY + PY
Sbjct: 104 QPGPPYGAVPYNYGPPPPQPQDPQYGYA-----TPN-PYVQGHPQPY 144
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 566 PPLNTPNMPYYMSNQNPYTGYGTQPQQ 646
PP+ P P Y + NPY +G QP++
Sbjct: 762 PPVYFPVPPPYFGHYNPYHPFGPQPRR 788
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 455 TPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPY 595
TP+ + P P P P P T P Y P+ TP PY
Sbjct: 143 TPSSPSSPTPTTPNPSTPTPTTPYPS-TPMPTTPYPSTPMTTPTTPY 188
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 482 PXNPGVCPPANQNPAPILTQNPNMGYGFPPL--NTPNMPYYMSNQNP 616
P P + P Q PAP + +NPN+ PP N P+ P N P
Sbjct: 157 PGTPALLPSV-QAPAPSVARNPNLPIVQPPSVNNPPSRPIGSGNGVP 202
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +2
Query: 494 GVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQPQQ 646
G P Q P +P GY P + Y + P +GYG P Q
Sbjct: 565 GQASPGQQTSTPAAGSHP--GYSSQPPTSAASSYPVQGSAPQSGYGAPPPQ 613
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = +2
Query: 455 TPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGT 634
T T P P + + P+ P GYG PP P TGYGT
Sbjct: 573 TSTPAAGSHPGYSSQPPTSAASSYPVQGSAPQSGYGAPP--------------PQTGYGT 618
Query: 635 QPQ 643
QPQ
Sbjct: 619 QPQ 621
>01_02_0007 + 10132380-10133201
Length = 273
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 458 PTIQQAMQPX-NPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNP 616
P Q QP NP P N NP P+ +PN P PN P + +P
Sbjct: 104 PLPQPGPQPNPNPQPLPQPNPNPQPLPQPDPNAPPLPLPQPNPNNPQPLPQPDP 157
>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 455 TPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNP 616
TP +Q A P P PP +P P+ ++ P NT + +N P
Sbjct: 980 TP-LQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAP 1032
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 449 RCTPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNM 589
+ T TIQ P P + PP P P PNM PP P +
Sbjct: 414 KATETIQYTELPPPPPLPPPPPPPPPPPPPLPPNMPPPLPPPPEPEL 460
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 503 PPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGY 628
PPA+ +P P P PP TP P +N +P Y
Sbjct: 102 PPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAY 143
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 368 SLKTDKRSPLNLLNRSMLQQFHHL 439
+++T K SPL L R++ +QFH L
Sbjct: 47 AVRTAKYSPLTFLPRNLFEQFHRL 70
>10_01_0225 - 2395100-2395323,2395358-2395499
Length = 121
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 507 GGQTPGXQGCIACCIV-GVHLRLPKWWNCWSIERFNRFNGLLLSVFNDQL 361
GG+ Q C C V G HL P+W WS E F++ L+ V + L
Sbjct: 42 GGEEEQGQCCQHCNEVSGSHL--PRWSESWSDEDFDQEKDALILVISANL 89
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 476 MQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMP 592
+QP +P PA PAP+ +P PP N P P
Sbjct: 228 VQPSSPAA--PAGVVPAPVQPSSPATAVPKPPSNDPYAP 264
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 538 SKYGCRILVSGRTNSWVXGLHSL 470
SK+ C I VSG W G HSL
Sbjct: 323 SKHTCAITVSGELFEWGEGAHSL 345
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 473 AMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNP 616
A P P PP P P T P PP +TP P Y P
Sbjct: 72 AYTPPKPTPTPPT-YTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTP 118
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = +2
Query: 455 TPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTP--NMPYYMSNQNPYTGY 628
TPT + P P PPA+ P T P PP TP P PYT
Sbjct: 86 TPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPT-----PPKPTPPTYKPQPKPTPAPYTPT 140
Query: 629 GTQP 640
T P
Sbjct: 141 PTPP 144
>02_01_0529 - 3846489-3847268
Length = 259
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 470 QAMQPXNPGVCPPANQNPAPILTQNP 547
QAM P P V PP +Q AP T NP
Sbjct: 31 QAMVPGAPAVVPPGSQPSAPFPT-NP 55
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +2
Query: 494 GVCPPANQNPA-PILTQNPNMGYGFPPLNTPNMPYYMS-NQNPYTGYGTQPQQA 649
G PP P P GYG+PP P Y P GYG QQA
Sbjct: 253 GTAPPPQYGYGYPAQPPPPQAGYGYPP-PPPQAGYGGGYGYPPQAGYGGYQQQA 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,193
Number of Sequences: 37544
Number of extensions: 362819
Number of successful extensions: 1100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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