Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G01
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 455 TPTIQQAMQPXNPGVCPPANQNPAPILTQNPN 550
           +P   Q   P NP   PP    P    +QNP+
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 611 SDSTCNKACLVCSKAGSH 558
           +DS C   CL   KAG H
Sbjct: 56  NDSACAANCLSLGKAGGH 73


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 611 SDSTCNKACLVCSKAGSH 558
           +DS C   CL   KAG H
Sbjct: 56  NDSACAANCLSLGKAGGH 73


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 499 NSWVXGLHSLLYCWCTS*VA*VVELLEH 416
           NSW+  +   +  W       ++EL+EH
Sbjct: 474 NSWMPSIRGAIQQWTCRQPEPLIELIEH 501


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 253 LMSQDNAGKKVTVGVTDEH 309
           LMSQDN  K+  V +   H
Sbjct: 226 LMSQDNHSKEYLVSIMFSH 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,297
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)