Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F22
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    23   9.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   9.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    23   9.2  

>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 306 LGISVGHVVMSE 271
           LG++VGHV MSE
Sbjct: 164 LGVAVGHVEMSE 175


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 248  DAGSRPHHSDITTCPTEMPSTTSY 319
            +AG RP    I T   E P+ T+Y
Sbjct: 974  EAGIRPFVKQIDTVAAEFPAFTNY 997


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 138  GDSGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXA 248
            GD+   +G  +G    +   P PA +    TP P  A
Sbjct: 986  GDTAPASGFKSGFSFGANNSPQPASMFGTSTPAPSSA 1022


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,603
Number of Sequences: 5004
Number of extensions: 8311
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)