Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F22
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1326 - 26158279-26159712 29 0.91
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 28 1.6
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 2.8
08_02_1314 + 26079390-26080181 27 3.7
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 27 3.7
12_01_0363 + 2750982-2751479 27 4.9
08_01_0334 + 2983306-2983593,2983697-2984116,2984230-2984291,298... 27 4.9
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158... 27 4.9
02_05_1229 - 35092135-35092252,35092662-35092764,35093014-350933... 27 4.9
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478... 26 6.4
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 26 6.4
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 26 6.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 26 6.4
05_04_0303 - 20010761-20011756 26 8.5
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 26 8.5
>08_02_1326 - 26158279-26159712
Length = 477
Score = 29.1 bits (62), Expect = 0.91
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 156 AGDSTGSKTDSARQPGPARIAS-GRT-PVP 239
AG+STG+K+ R P P R+ + G T PVP
Sbjct: 361 AGESTGTKSGKKRGPAPLRVYNLGNTSPVP 390
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 221 GADASPPXGDAGSRPHHSDITTCPTEMPSTTSYSARF 331
G PP +AGSRP+ ++T + PS Y RF
Sbjct: 15 GLAPRPPLQEAGSRPYMPSLSTA-SRNPSAKCYGDRF 50
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 186 SARQPGPARIASGRTPVPPXATLGPALITQTS 281
+ R+ GPA +AS PP AT+ P I+ +S
Sbjct: 13 AVRRSGPAALASRWMHTPPFATVSPQEISGSS 44
>08_02_1314 + 26079390-26080181
Length = 263
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 153 LAGDSTGSKTDSARQPGPARIASGRTP 233
LAG + T A +P PA +A G P
Sbjct: 193 LAGSKAATATSPASEPAPAPVAGGPAP 219
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 186 SARQPGPARIASGRTPVPPXATLGPALITQTS 281
+A PGP +A+ TP P A PA+ + +S
Sbjct: 106 AASTPGPVAVAARSTPPPTPAVQIPAVASSSS 137
>12_01_0363 + 2750982-2751479
Length = 165
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 162 DSTGSKTDSARQPGPARIASGRTPVPPXATLGP 260
D GSK ++ GPA + S PVP A L P
Sbjct: 47 DDEGSK--KKKRAGPAAVRSASRPVPETAPLTP 77
>08_01_0334 +
2983306-2983593,2983697-2984116,2984230-2984291,
2984525-2984672
Length = 305
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 153 LAGDSTGSKTDSARQPGPARIASGR 227
+AG STG+ + AR GPA IA+GR
Sbjct: 255 VAGPSTGASMNPARTLGPA-IATGR 278
>06_01_0207 +
1579343-1579529,1579610-1579659,1579896-1580092,
1580343-1580469,1580562-1580693
Length = 230
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 135 GGDSGTLAGDSTGSKTDSARQPGPAR 212
GG+ G +AGDS+G + +S AR
Sbjct: 51 GGEKGAVAGDSSGKQGESDAAKNKAR 76
>02_05_1229 -
35092135-35092252,35092662-35092764,35093014-35093315,
35093849-35094171
Length = 281
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 135 GGDSGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXATLGP 260
G D G S GSK +Q P RI + R + P A L P
Sbjct: 29 GDDEELELGLSLGSKKQQQQQHAPCRILTAR-DLQPAAALSP 69
>04_04_1398 -
33245268-33245876,33247516-33247608,33247639-33247827,
33248146-33248496
Length = 413
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 171 GSKTDSARQPGPARIASGRTPVPPXATLGPA 263
GSK + P I +GR P PP + G A
Sbjct: 5 GSKKRKLAEEDPGIIGAGRPPSPPSGSRGSA 35
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 144 SGTLAGDSTGSKTDSARQPGP 206
S T GD+TG+ D+ RQP P
Sbjct: 730 SFTREGDATGTHADAQRQPWP 750
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 153 LAGDSTGSKT---DSARQPGPARIASGRTPVPPXATLGPALI 269
L G ++GS T SA P P +A PVP AT P+L+
Sbjct: 499 LRGSASGSPTLAFPSAAAPPPPPLALELLPVPESATDFPSLL 540
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 AGDSTGSKTDSARQPGPARIASGRTPVP-PXATLGPA 263
A ++GS + S+R+P P A+ R P P P A PA
Sbjct: 6 AAAASGSAS-SSRKPVPVAAAAARRPAPSPAAAAAPA 41
>05_04_0303 - 20010761-20011756
Length = 331
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Frame = +3
Query: 135 GGDSGTLAGDSTGSKTDSARQP----------GPARIASGRTPVPPXATLG 257
GG +G S+GS TD+A + P R +G P PP A +G
Sbjct: 180 GGGAGAGGSHSSGSGTDAATEHLFATGPVPFLPPGRAPAGGDPYPPFAPMG 230
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 135 GGDSGTLAGDSTGSKTDSARQPGPARIASGRTPVP 239
GGD G GD G + R+ P R S RT P
Sbjct: 15 GGDGGGCGGDEVGDEGGGLRRV-PRRQPSSRTSPP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,136,269
Number of Sequences: 37544
Number of extensions: 80764
Number of successful extensions: 433
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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