Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F22
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             31   0.18 
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   31   0.31 
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.54 
SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)                      27   5.0  
SB_51733| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 GTLAG-DSTGSKTDSARQPGPARIASGRTPVPPXATLGPAL 266
           G LAG D T S   S+     ARI++  +PV P  TL P L
Sbjct: 484 GNLAGQDETSSVRTSSNAADDARISTTSSPVTPSGTLTPRL 524


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 SGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXAT 251
           +G+ AG  T  K D  ++  P   A+GR   PP AT
Sbjct: 476 TGSQAGKRTPKKMDKVKKASPGSRAAGRRTNPPSAT 511


>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +3

Query: 141 DSGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXATLGPALI 269
           +S TL  D     T  A Q  PA I  G  PVPP  TL PA++
Sbjct: 855 ESATLVADIVRRVT--AEQVHPAAIP-GNPPVPPLETLPPAIV 894


>SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 213 IASGRTPVPPXATLGPALITQTS 281
           + S  +P+PP    GP ++T TS
Sbjct: 165 VTSANSPLPPAPNYGPPVLTNTS 187


>SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)
          Length = 658

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 144 SGTLAGDSTGSKTDSARQPGPARIASGRTP 233
           +G L G  TGSKT    +PG A + +   P
Sbjct: 38  TGMLCGQFTGSKTTRIPRPGGANVGTPAWP 67


>SB_51733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 239 PXGDAGSRPHHSDITTCP 292
           P GD   RP+ S IT CP
Sbjct: 34  PFGDPYGRPNESQITCCP 51


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 144 SGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXATLGPA 263
           S    GDS+      AR   PARI S      P     PA
Sbjct: 496 SNESTGDSSSGGASPARTTSPARITSPARASSPAGRASPA 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,813,623
Number of Sequences: 59808
Number of extensions: 81959
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)