Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F22
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   0.97 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 227 DASP-PXGDAGSRPHHSDITTC 289
           +A P P G A S+ H+ ++TTC
Sbjct: 698 EAEPQPIGKALSKCHNRNVTTC 719


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 260 RPHHSDITTCPTEMPSTTSY 319
           RP    I T   E P+TT+Y
Sbjct: 342 RPMVKQIDTVAAEWPATTNY 361


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 198 PGPARIASGRTPVPPXATLGPALIT 272
           PG   +     P PP ATL    IT
Sbjct: 287 PGEVDLPPETQPTPPSATLVGTTIT 311



 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 206 RAHRLGADASPPXGDAGS 259
           RAHRLG D     G   S
Sbjct: 447 RAHRLGIDTPKKDGPTKS 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,328
Number of Sequences: 438
Number of extensions: 683
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)