Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F22
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    29   1.0  
At3g47400.1 68416.m05154 pectinesterase family protein similar t...    28   1.8  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   1.8  
At3g22990.1 68416.m02899 expressed protein                             27   2.4  
At3g28790.1 68416.m03593 expressed protein                             27   3.1  
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    27   3.1  
At1g52000.1 68414.m05866 jacalin lectin family protein similar t...    27   4.1  
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa...    27   4.1  
At1g47330.1 68414.m05240 expressed protein contains Pfam profile...    26   7.2  
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    25   9.5  
At1g61330.1 68414.m06912 F-box family protein contains Pfam prof...    25   9.5  

>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 159 GDSTGSKTDSARQP--GPARIASGRTPVPPXAT 251
           GD +G+ TDS+  P    A+IA G TP  P ++
Sbjct: 46  GDGSGASTDSSEAPTSEDAKIAEGLTPTLPDSS 78


>At3g47400.1 68416.m05154 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Vitis vinifera
           GI:15081598, Lycopersicon esculentum SP|Q43143
           SP|P14280; contains Pfam profile PF01095 pectinesterase
          Length = 594

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 221 GADASPPXGDAGSRPHHSDITTCPTEMPSTTS 316
           G DA PP     S P  +  +  PT  PSTTS
Sbjct: 31  GTDAPPPWDHNVSPPPETAPSPTPTSSPSTTS 62


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 171 GSKTDSARQPGPARIASGRTPVPPXATLGPALITQTS 281
           GS     +QP PA +A+    +PP A+     +T TS
Sbjct: 286 GSNEARTKQPKPAGVATRNVDLPPGASSSKEEVTGTS 322


>At3g22990.1 68416.m02899 expressed protein
          Length = 460

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 135 GGDSGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXATLGPALITQTS 281
           GG SG  A       + SA     A  A+    + P A LGP+L+   S
Sbjct: 14  GGSSGPPAKRGRPFGSTSANSAAAAAAAAAADAMSPSALLGPSLLVHNS 62


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 135 GGDSGTLAGDSTGSKTDSARQPGPARIASGRTP-VPPXATLGPALITQTS 281
           GG SG    D+TGS + ++    P    S  TP  P  +T  P+  T ++
Sbjct: 256 GGSSGNTYKDTTGSSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPST 305


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
           similar to protein transport protein Sec24A
           (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 180 TDSARQPGPARIASGRTPVPPXATLGP 260
           T SA QP     ASG  P PP  T+ P
Sbjct: 48  TPSASQPTRPFTASGPPPAPPVGTMRP 74


>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296,
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 730

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 138 GDSGTLAGDSTGSKTDSARQPGPARIASGRTPVPPXATLG 257
           G +GT  G S G   ++ +  G ++ +SG+    P A  G
Sbjct: 204 GSAGTNPGASAGGNGETEKNVGGSKPSSGKAGTNPGANAG 243


>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
           family protein similar to inositol 1,4,5-trisphosphate
           5-phosphatase (GI:4688596) [Arabidopsis thaliana]
          Length = 861

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 221 GADASPPXGDAGSRPHHSDITTCPT 295
           G     P GD  + P H  +TT PT
Sbjct: 186 GIGGQVPRGDEDTAPFHESVTTSPT 210


>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 527

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 209 AHRLGADASPPXGDAGSRPHHSDITTCPTEMPSTTSYS 322
           +H    D+SP    + S P      + PT  PS +S+S
Sbjct: 478 SHMATPDSSPTTKPSNSSPTRKPSVSSPTREPSDSSHS 515


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 135 GGDSGTLAGDSTGSKTDSARQPGPARIASG 224
           GGD   L GD +GS+ +   +P  A+   G
Sbjct: 85  GGDGEDLDGDGSGSEEEKEERPVKAKKRGG 114


>At1g61330.1 68414.m06912 F-box family protein contains Pfam
           profile: PF00646 F-box domain; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 447

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 103 YAKIAMALKVNLLKVRELPHNSSTRSHA 20
           YAK    LKVN L+  E  ++ S R H+
Sbjct: 240 YAKTINVLKVNALEEAEFHYSRSKRRHS 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,498,760
Number of Sequences: 28952
Number of extensions: 51694
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)