Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F20
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   3.7  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   3.7  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   6.5  
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)                  27   8.6  

>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
 Frame = +2

Query: 101 MAKPKN--EDASEEAKKIVDDA----KNFIERAIA-DIGKTSATKQLILGTASGWITGFI 259
           M+ P++  ED+ EE  +I++      ++ +   ++ D+G  +  +Q+ +G A+GW  G++
Sbjct: 1   MSDPESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGATGWFAGYM 60

Query: 260 SMXXXXXXXXXXXXXXXXXXXXSQKGYIDINWDKINKKVDKISDKIEKE----ATGKSP- 424
                                  + GYI+INW K+ K  +K+S  +E+E    A G S  
Sbjct: 61  CKKIGKLTISAIGGGILILQIAHKTGYININWKKVEKDYNKVSRHVEREVYKVAQGNSST 120

Query: 425 -----DWFEKVFVFVKSNSYYSAGFTGGF 496
                    ++F + K N   ++GF GGF
Sbjct: 121 EQRIVGTGRQIFDYAKRNMAAASGFAGGF 149


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 338 YIDI-NWDKINK-KVDKISDKIEKEATGKSPDWFEKVFVFVK 457
           YI I + +K+ K K D+I +   K +TG +P+W E++F+F K
Sbjct: 767 YITILSEEKVEKRKHDRIPENT-KTSTGYTPNWTEEIFIFDK 807


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 341 IDINWDKINKKVDKISDKIEKEATGKSPDWFEK 439
           +D N + +NK + +  DK+EKE   K   W  K
Sbjct: 77  LDQNAEAVNKALSERVDKLEKEQRAKMDQWETK 109


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 107 KPKNEDASEEAKKIVDDAKNFIERAIADIGKTSA 208
           KPK +D+  E  KI+  +   IE  I D+  T++
Sbjct: 244 KPKGDDSEVEKAKIIQTSARLIESEIKDLPTTTS 277


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 104 AKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSAT 211
           ++P+ EDA + +  +++DA       I D  K SAT
Sbjct: 303 SRPREEDAVKHSATVIEDAVKHSSTVIEDAVKHSAT 338


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 253 FYIYEDWKSSSCWTWRWSHSFTHCK 327
           F+    + S S WTW WS   T C+
Sbjct: 2   FWFPSSFNSWSPWTWNWSFVGTACR 26


>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
          Length = 472

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 244 DNWFYIYEDWKSSSC 288
           D+W Y+YE W  S C
Sbjct: 63  DDWQYVYESWFPSKC 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,898
Number of Sequences: 59808
Number of extensions: 179221
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)