Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F19
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   1.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   1.8  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   3.1  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   5.4  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.1  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   9.4  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 193 LDWSLWAFSRFRPIRSPLLELQTKVMQTSLQK 288
           L W L+ +  FRP++  LL+ QT + + +++K
Sbjct: 159 LKWDLYVWLPFRPLQGFLLDCQTVLPKVAVEK 190


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 314 LRTVGHLSCFWSEVCITFVWSSSNGDRIGRXREKAQRDQSSLHWLVLCCLLSEEF 150
           L+  G L C       T  W +  GD I       Q+++  LH L +  L++ E+
Sbjct: 17  LKKCGELICEICRDLYTSGWVTGTGDAIVIAPSGVQKERMELHHLFVMSLITREY 71


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 68  SSTEETSQLKAGHPPAVKAGGMRITQHK 151
           S+T  TSQLK  H   VK     +T+H+
Sbjct: 24  STTPSTSQLKHSHESNVKMSTSTVTEHR 51


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 128 GMRITQHKTPHSKDSKEPANEDLTGLSGPSPXSVQSDL 241
           G+RI  H+ P S    +   E+ + ++ PS  S Q+D+
Sbjct: 218 GIRILIHERPSSLSKPKKDGEETSSVNKPSASSTQTDV 255


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 50  NYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSP 220
           NY ++ SS +E  +LK GH   ++ G   + +H +    +S  P   D++ L+   P
Sbjct: 4   NYTSLKSSVDEEDELKTGHEIDLEKG--PLPEHNS--EGESTLPPYSDISKLANLVP 56


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 262 LFGAPAMEIGLDGXGRRPRETSQVFIGWFF 173
           +FG P   +GL+G  RR  +  + F+GW F
Sbjct: 430 VFG-PQHFLGLNGMPRRIPDYPEAFVGWNF 458


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 341 WSEINVRWRLRTVGHLSCFWSEV 273
           ++E++  W+  TVG  S +W ++
Sbjct: 279 YNEVDAAWKSLTVGDKSYYWGDI 301


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 258 NKGNAD-FTPEAAQVAHSPKPPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNGIENVR 431
           +KGN+  F P    V    K  A ++  PS N+Q+    + A    +RL +   +E +R
Sbjct: 440 DKGNSSPFKPLELNVVGEKKANAEVDSLPSENVQESED-DKAFEENRRLRNLGSVEYIR 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,805
Number of Sequences: 5004
Number of extensions: 50730
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)