Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F19
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17... 30 1.4
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 4.2
12_02_0224 - 15874958-15875311 28 7.4
07_01_1106 - 10187609-10190041,10190292-10191932 28 7.4
03_06_0373 + 33468711-33468917,33469020-33469217 28 7.4
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 28 7.4
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 28 7.4
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 28 7.4
03_02_0973 - 12826036-12826131,12826379-12826462,12826542-128265... 27 9.7
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 27 9.7
>02_01_0028 -
172243-172435,172550-172701,172801-173341,173640-173824
Length = 356
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = -3
Query: 532 AHEDQGGQGHSQSIAMVKHSNNYTIF*YFEFYDCLTFSIPLLCINLLVIKCAAFYFLGCW 353
A + G GH S+ MVK++ +T+ +CL FS+ LL L K A Y
Sbjct: 146 AMDASAGGGHGGSV-MVKNNKQWTLGTVMLLGNCLCFSLWLLLQGKLTKKYPAIYSCTAI 204
Query: 352 MF 347
MF
Sbjct: 205 MF 206
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 499 GCAPGLPGLHEQCRACV 549
G + GLP LHE+CR C+
Sbjct: 678 GISKGLPYLHERCRDCI 694
>12_02_0224 - 15874958-15875311
Length = 117
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 335 EINVRWRLRTVGHLSCFWSEVCITFVWSSSNGDRIGRXREKAQR 204
E + W RTVG SC E + W++ GR E+AQR
Sbjct: 27 EEELSWAKRTVGDCSCISGEEEAS--WANRTDCGCGRGEEEAQR 68
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 445 EFYDC---LTFSIPLLCI-NLLVIKCAAFYFLGCWMFG 344
E DC ++ PLL + NL V++C +F G W+ G
Sbjct: 1311 EISDCKELVSIDAPLLSVSNLKVVRCPKLHFGGSWLEG 1348
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 505 APGL-PGLHEQCRACVAVLPSKAIKHASWF 591
AP L P +H+ +ACVA PS + WF
Sbjct: 63 APALGPPVHKNSKACVASYPSVVQNNILWF 92
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 505 APGL-PGLHEQCRACVAVLPSKAIKHASWF 591
AP L P +H+ +ACVA PS + WF
Sbjct: 165 APALGPPVHKNSKACVASYPSVVQNNILWF 194
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 505 APGL-PGLHEQCRACVAVLPSKAIKHASWF 591
AP L P +H+ +ACVA PS + WF
Sbjct: 173 APALGPPVHKNSKACVASYPSVVQNNILWF 202
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 505 APGL-PGLHEQCRACVAVLPSKAIKHASWF 591
AP L P +H+ +ACVA PS + WF
Sbjct: 168 APALGPPVHKNSKACVASYPSVVQNNILWF 197
>03_02_0973 -
12826036-12826131,12826379-12826462,12826542-12826595,
12826742-12826830,12826889-12826985,12827066-12827074,
12827419-12827478,12828082-12828204,12828654-12828758,
12830203-12830535
Length = 349
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 98 AGHPPAVKAGGMRITQHKTPHSKDSKEPA 184
AGH V A G + ++ PH+KDS PA
Sbjct: 220 AGHACLVLAAGKKGKRYMFPHAKDSIMPA 248
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 243 IAGAPNKGNADFTPEAAQVAHSPK 314
I G + GNA P+ QV HSP+
Sbjct: 114 IGGGEDDGNASPVPDKVQVGHSPQ 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,533
Number of Sequences: 37544
Number of extensions: 341339
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -